Effective results for Saccharomonospora viridis DSM 43017 (eggnog40)

Summary

Number of putative secreted proteins: 25
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 25 proteins (0 high, 25 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
471857.Svir_18700(PF04253)ER
471857.Svir_04780(PF12483)ER
471857.Svir_23180(PF08326)mitochondrial; (mitochondrial)
471857.Svir_07850(PF02575)
471857.Svir_04980(PF14021)
471857.Svir_36540(PF02224)
471857.Svir_08080(PF13580)
471857.Svir_34960(PF13580)
471857.Svir_05930(PF02575)
471857.Svir_37520(PF11991)
471857.Svir_14810(PF02224)
471857.Svir_39590(PF14021)
471857.Svir_26670(PF00755)
471857.Svir_03920(PF02575)
471857.Svir_21050(PF02575)
471857.Svir_32830(PF02575)
471857.Svir_14040(PF02575)
471857.Svir_23530(PF02575)
471857.Svir_08100(PF13580)
471857.Svir_11240(PF13580)
471857.Svir_25390(PF06884)
471857.Svir_05950(PF14021)
471857.Svir_10970(PF02575)
471857.Svir_35990(PF13580)
471857.Svir_36560(PF02575)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================