Effective results for Saccharomonospora viridis DSM 43017 (eggnog40)

Summary

Number of putative secreted proteins: 25
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 25 proteins (0 high, 25 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
471857.Svir_18700				(PF04253)	ER
471857.Svir_04780				(PF12483)	ER
471857.Svir_23180				(PF08326)	mitochondrial; (mitochondrial)
471857.Svir_07850				(PF02575)
471857.Svir_04980				(PF14021)
471857.Svir_36540				(PF02224)
471857.Svir_08080				(PF13580)
471857.Svir_34960				(PF13580)
471857.Svir_05930				(PF02575)
471857.Svir_37520				(PF11991)
471857.Svir_14810				(PF02224)
471857.Svir_39590				(PF14021)
471857.Svir_26670				(PF00755)
471857.Svir_03920				(PF02575)
471857.Svir_21050				(PF02575)
471857.Svir_32830				(PF02575)
471857.Svir_14040				(PF02575)
471857.Svir_23530				(PF02575)
471857.Svir_08100				(PF13580)
471857.Svir_11240				(PF13580)
471857.Svir_25390				(PF06884)
471857.Svir_05950				(PF14021)
471857.Svir_10970				(PF02575)
471857.Svir_35990				(PF13580)
471857.Svir_36560				(PF02575)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================