Effective results for Candidatus Desulforudis audaxviator MP104C (eggnog40)

Summary

Number of putative secreted proteins: 48
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 48 proteins (1 high, 47 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
477974.Daud_1808				(PF05598)	(ER)
477974.Daud_1809				(PF05598)	(ER)
477974.Daud_1807				(PF05598)	(ER)
477974.Daud_1680				(PF03023)	ER
477974.Daud_2088				(PF03023)	ER
477974.Daud_1984				(PF13187)	ER
477974.Daud_1654				(PF03023)	ER
477974.Daud_0695				(PF05598)	(ER)
477974.Daud_1548				(PF02256) (PF02906)
477974.Daud_1143				(PF05189)	(mitochondrial)
477974.Daud_0159				(PF01609) (PF05598)
477974.Daud_0152				(PF02256) (PF02906)
477974.Daud_0157				(PF02256) (PF02906)
477974.Daud_1999				(PF10063)	(ER)
477974.Daud_0792				(PF05598)	(mitochondrial)
477974.Daud_1503				(PF01609) (PF05598)
477974.Daud_1502				(PF01609) (PF05598)
477974.Daud_0587				(PF01609) (PF05598)
477974.Daud_0173				(PF01609) (PF05598)
477974.Daud_1752				(PF01609) (PF05598)
477974.Daud_1246				(PF01609) (PF05598)
477974.Daud_2194				(PF01609) (PF05598)
477974.Daud_0432				(PF01609) (PF05598)
477974.Daud_1735				(PF01609) (PF05598)
477974.Daud_0420				(PF05598)	(mitochondrial)
477974.Daud_0428				(PF01609) (PF05598)
477974.Daud_0257				(PF01609) (PF05598)
477974.Daud_0399				(PF01609) (PF05598)
477974.Daud_1337				(PF02256) (PF02906)
477974.Daud_0218				(PF01609) (PF05598)
477974.Daud_0215				(PF01609) (PF05598)
477974.Daud_1492				(PF02933)
477974.Daud_0958				(PF01609)
477974.Daud_0789				(PF13187)
477974.Daud_1883				(PF13187)
477974.Daud_1684				(PF03023)
477974.Daud_1163				(PF16760)
477974.Daud_0914				(PF13187)
477974.Daud_2196				PF13513
477974.Daud_0109				(PF13187)
477974.Daud_0721				(PF01609)
477974.Daud_1252				(PF13187)
477974.Daud_1886				(PF13187)
477974.Daud_1888				(PF13187)
477974.Daud_0413				(PF02906)
477974.Daud_0986				(PF09419)
477974.Daud_1955				(PF01609)
477974.Daud_0687				(PF05598)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================