Effective results for Bacteroides pectinophilus ATCC 43243 (eggnog40)

Summary

Number of putative secreted proteins: 81
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 26 eukaryotic-like domains, contained in 81 proteins (3 high, 78 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
483218.BACPEC_00931(PF01554)ER
483218.BACPEC_01026(PF06541)ER
483218.BACPEC_02483(PF00059)ER
483218.BACPEC_02642(PF01554)(ER); ER
483218.BACPEC_00676(PF03442)(ER); ER
483218.BACPEC_01911(PF06541)ER
483218.BACPEC_02234(PF06480)ER
483218.BACPEC_01903(PF01554)ER
483218.BACPEC_01452(PF00625)ER
483218.BACPEC_02161(PF05698)ER; (ER)
483218.BACPEC_00520(PF01554)(ER)
483218.BACPEC_01039(PF06480)ER
483218.BACPEC_02965(PF01554)ER
483218.BACPEC_00142(PF01554)ER
483218.BACPEC_00547(PF16116)ER
483218.BACPEC_01194(PF00209)ER
483218.BACPEC_02952(PF03959)ER
483218.BACPEC_02700(PF06480)ER
483218.BACPEC_03257(PF05698)ER
483218.BACPEC_00350(PF01554)ER
483218.BACPEC_00351(PF01554)(ER)
483218.BACPEC_00627(PF00209)(ER)
483218.BACPEC_01875(PF06541)ER
483218.BACPEC_01920(PF01554)(plastid)
483218.BACPEC_03153(PF01416)(mitochondrial)
483218.BACPEC_03201(PF02655)(mitochondrial)
483218.BACPEC_03042(PF01554)(plastid)
483218.BACPEC_00489(PF01554)(plastid)
483218.BACPEC_01193(PF00209)(ER)
483218.BACPEC_00629(PF01554)(plastid)
483218.BACPEC_01114(PF06541)
483218.BACPEC_03032(PF01554)
483218.BACPEC_02927(PF00231)
483218.BACPEC_02926(PF00231)
483218.BACPEC_01108(PF05698)
483218.BACPEC_01046PF05183
483218.BACPEC_03194(PF02655)
483218.BACPEC_00403(PF02938)
483218.BACPEC_00986(PF13155)
483218.BACPEC_00187(PF03432)
483218.BACPEC_01453(PF00625)
483218.BACPEC_01129(PF01554)
483218.BACPEC_00018(PF01554)
483218.BACPEC_02162(PF01554)
483218.BACPEC_02599(PF13155)
483218.BACPEC_02594(PF04253)
483218.BACPEC_02595(PF03432)
483218.BACPEC_02686(PF13151)
483218.BACPEC_02173(PF01554)
483218.BACPEC_01921(PF01554)
483218.BACPEC_02782(PF01554)
483218.BACPEC_00524(PF12646)
483218.BACPEC_02209(PF03442)not used
483218.BACPEC_02374PF10250
483218.BACPEC_03152(PF01416)
483218.BACPEC_02848(PF03432)
483218.BACPEC_01942(PF01554)
483218.BACPEC_03142(PF13155)
483218.BACPEC_01972(PF01416)
483218.BACPEC_00798(PF02938)
483218.BACPEC_00550(PF16116)
483218.BACPEC_00488(PF01554)
483218.BACPEC_01195(PF00209)
483218.BACPEC_01183(PF13455)
483218.BACPEC_03275(PF00231)
483218.BACPEC_03276(PF00231)not used
483218.BACPEC_00771(PF01416)
483218.BACPEC_01737(PF03432)
483218.BACPEC_01733(PF13155)
483218.BACPEC_01730(PF14311)
483218.BACPEC_02456(PF04991)
483218.BACPEC_02297(PF00625)
483218.BACPEC_02671(PF02475)
483218.BACPEC_02440(PF02655)
483218.BACPEC_02666(PF00209)
483218.BACPEC_01403(PF04991)
483218.BACPEC_01248(PF03432)
483218.BACPEC_01399(PF04991)
483218.BACPEC_02270PF01369
483218.BACPEC_03014(PF06480)
483218.BACPEC_01389(PF04991)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================