Effective results for Desulfohalobium retbaense DSM 5692 (eggnog40)

Summary

Number of putative secreted proteins: 56
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 56 proteins (2 high, 54 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
485915.Dret_0987				PF04733	(ER)
485915.Dret_0080				(PF00037)	mitochondrial
485915.Dret_0896				(PF00037)	(ER)
485915.Dret_0285				(PF02516)	ER
485915.Dret_2474				(PF00037)	(ER)
485915.Dret_1640				(PF00037)	ER
485915.Dret_1487				(PF00037)	mitochondrial
485915.Dret_0815				(PF16561)	(mitochondrial)
485915.Dret_0421				(PF00037)	(plastid)
485915.Dret_2012				(PF13534)
485915.Dret_1280				(PF00037)
485915.Dret_0417				(PF13534)
485915.Dret_0419				(PF00037)
485915.Dret_0418				(PF00037)
485915.Dret_1052				(PF01937)
485915.Dret_1542				(PF01610)
485915.Dret_0551				(PF01610)
485915.Dret_1407				(PF02943)
485915.Dret_1963				(PF13534)
485915.Dret_1569				(PF16561)
485915.Dret_0373				(PF01610)
485915.Dret_0599				(PF01610)
485915.Dret_2266				(PF01980)
485915.Dret_0646				(PF01610)
485915.Dret_1174				(PF01610)
485915.Dret_1177				(PF01610)
485915.Dret_1205				(PF02915)
485915.Dret_1446				(PF13534)
485915.Dret_0341				(PF01610)
485915.Dret_1839				(PF01980)
485915.Dret_0833				(PF00037)
485915.Dret_1825				(PF01991)
485915.Dret_2310				(PF02915)
485915.Dret_2313				(PF13534)
485915.Dret_2315				(PF00037)
485915.Dret_2317				(PF13534)
485915.Dret_0061				(PF02915)
485915.Dret_0250				(PF09825)
485915.Dret_1809				(PF13534)
485915.Dret_0442				(PF00037)
485915.Dret_0441				(PF00037)
485915.Dret_0272				(PF00037)
485915.Dret_1308				(PF02915)
485915.Dret_0872				(PF13534)
485915.Dret_0055				(PF16983)
485915.Dret_0204				PF01591
485915.Dret_1644				(PF02915)
485915.Dret_1002				(PF01610)
485915.Dret_2177				(PF00037)
485915.Dret_0194				(PF13534)
485915.Dret_0196				(PF00037)
485915.Dret_0191				(PF02915)
485915.Dret_0198				(PF13534)
485915.Dret_2002				(PF01610)
485915.Dret_0217				(PF01980)
485915.Dret_0500				(PF01937)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================