Metamenu

Effective results for Flavobacteria bacterium MS024-2A (eggnog40)

Summary

Number of putative secreted proteins: 17
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 17 proteins (0 high, 17 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
487796.Flav2ADRAFT_0708(PF00028) (PF02412)ER
487796.Flav2ADRAFT_1758(PF00028) (PF02412)ER
487796.Flav2ADRAFT_0197(PF16313)ER
487796.Flav2ADRAFT_0974(PF15902)ER
487796.Flav2ADRAFT_1549(PF00050)ER
487796.Flav2ADRAFT_1665(PF16313)ER
487796.Flav2ADRAFT_0725(PF02412)ER
487796.Flav2ADRAFT_0723(PF13582)ER
487796.Flav2ADRAFT_0105(PF15902)ER
487796.Flav2ADRAFT_0594(PF15902)ER
487796.Flav2ADRAFT_0917(PF04253)ER
487796.Flav2ADRAFT_1405(PF02412)ER
487796.Flav2ADRAFT_0327(PF16313)ER
487796.Flav2ADRAFT_0813(PF10504)
487796.Flav2ADRAFT_0902(PF02412)
487796.Flav2ADRAFT_0882(PF02412)
487796.Flav2ADRAFT_1684(PF05153)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================