Effective results for Edwardsiella tarda EIB202 (eggnog40)

Summary

Number of putative secreted proteins: 388
- Predicted by EffectiveT3: 106 (high confidence), 182 (low confidence)
- Predicted by EffectiveCCBD: 20 within, 17 before, 19 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 54 proteins (0 high, 54 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
498217.ETAE_3160(>)(mitochondrial); mitochondrial
498217.ETAE_2361(PF03577)ER
498217.ETAE_0932(PF13415)ER
498217.ETAE_1716(<)(ER)
498217.ETAE_3483(+)+ER
498217.ETAE_1234+(mitochondrial); (plastid)
498217.ETAE_1415+(ER)
498217.ETAE_2600(>)ER
498217.ETAE_1175+(mitochondrial)
498217.ETAE_2014(>)mitochondrial
498217.ETAE_0568+(mitochondrial)
498217.ETAE_0569(<)(ER)
498217.ETAE_1758(PF00328)(mitochondrial)
498217.ETAE_1589(PF00030)ER
498217.ETAE_0379+(ER); (mitochondrial)
498217.ETAE_2596(PF02112)ER
498217.ETAE_1916(PF00030)ER
498217.ETAE_0511(>)ER
498217.ETAE_1657(>)ER
498217.ETAE_2273(PF03577)ER
498217.ETAE_2918(PF02884)(ER)
498217.ETAE_2917(PF02884)ER
498217.ETAE_0820(PF13332)(mitochondrial)
498217.ETAE_2464(>)ER
498217.ETAE_0221+ER
498217.ETAE_1316(PF00328)ER
498217.ETAE_1314+ER
498217.ETAE_3425+(mitochondrial); (plastid)
498217.ETAE_1104(<)ER
498217.ETAE_1458+ER
498217.ETAE_1194(<)ER
498217.ETAE_0913(PF01228)mitochondrial
498217.ETAE_1733+ER
498217.ETAE_0260(PF01276) (PF03711)
498217.ETAE_3004(PF01276) (PF03711)
498217.ETAE_3006(PF01276) (PF03711)
498217.ETAE_1186+(ER)
498217.ETAE_1216(PF02796)(plastid)
498217.ETAE_1728+(PF03577)
498217.ETAE_2188(+)ER
498217.ETAE_0450(PF01228)(mitochondrial)
498217.ETAE_0284(PF01276) (PF03711)
498217.ETAE_0757(PF01276) (PF03711)
498217.ETAE_2771+(plastid)
498217.ETAE_1389(PF02796)(plastid)
498217.ETAE_1544+(plastid)
498217.ETAE_3054(PF02796)(plastid)
498217.ETAE_1375(+)(mitochondrial)
498217.ETAE_1598(PF02796)(plastid)
498217.ETAE_3066(PF02796)(plastid)
498217.ETAE_3064+(>)
498217.ETAE_0611(+)(mitochondrial)
498217.ETAE_0362(+)ER
498217.ETAE_2825(+)mitochondrial
498217.ETAE_1635(PF02796)(plastid)
498217.ETAE_3077(PF02796)(plastid)
498217.ETAE_2029(<)(plastid)
498217.ETAE_1822+(plastid)
498217.ETAE_1070(+)ER
498217.ETAE_2478(PF02796)(plastid)
498217.ETAE_2177(+)(mitochondrial)
498217.ETAE_0848(+)(ER)
498217.ETAE_2319(+)(ER)
498217.ETAE_0039(PF02796)(plastid)
498217.ETAE_0817+(PF13332)
498217.ETAE_0815+(PF13332)
498217.ETAE_1250(PF13436)(mitochondrial)
498217.ETAE_2921(+)ER
498217.ETAE_0259(+)(PF01276)(ER)
498217.ETAE_2130+plastid
498217.ETAE_1315+ER; not used
498217.ETAE_0807(PF02796)(plastid)
498217.ETAE_3422(PF02796)(plastid)
498217.ETAE_2128+plastid
498217.ETAE_2966+(plastid)
498217.ETAE_0240(>)(plastid)
498217.ETAE_2885(<)(ER)
498217.ETAE_3003(PF01276)
498217.ETAE_1215(PF01695)
498217.ETAE_1211+
498217.ETAE_0853+
498217.ETAE_0856+
498217.ETAE_0854+
498217.ETAE_1504+not used
498217.ETAE_2635+
498217.ETAE_2404(<)
498217.ETAE_1724(>)
498217.ETAE_2740+
498217.ETAE_2182(PF01228)
498217.ETAE_0674(+)(mitochondrial)
498217.ETAE_0671+
498217.ETAE_3166+
498217.ETAE_2363(<)
498217.ETAE_1982+
498217.ETAE_3339+
498217.ETAE_0118+
498217.ETAE_1228(+)(plastid)
498217.ETAE_1227+
498217.ETAE_1710+
498217.ETAE_2571+
498217.ETAE_3020+
498217.ETAE_3152+
498217.ETAE_1235+
498217.ETAE_2766+
498217.ETAE_2147+
498217.ETAE_2142+
498217.ETAE_3364(+)(plastid)
498217.ETAE_3362+
498217.ETAE_3149+
498217.ETAE_0044+
498217.ETAE_2815(>)
498217.ETAE_1390(PF01695)
498217.ETAE_1555+
498217.ETAE_3392+
498217.ETAE_2398(+)(mitochondrial)
498217.ETAE_2396(+)(plastid)
498217.ETAE_0091+
498217.ETAE_1382+
498217.ETAE_0896+
498217.ETAE_0897(PF01228)
498217.ETAE_2946+
498217.ETAE_2706+
498217.ETAE_2018+
498217.ETAE_3545+
498217.ETAE_2238+
498217.ETAE_3053(PF01695)
498217.ETAE_0562+not used
498217.ETAE_0398+
498217.ETAE_0087(+)(mitochondrial)
498217.ETAE_2833(+)(plastid)
498217.ETAE_2955+not used
498217.ETAE_1289+
498217.ETAE_1282(+)(mitochondrial)
498217.ETAE_1376(+)(mitochondrial)
498217.ETAE_0888(+)plastid
498217.ETAE_1575+
498217.ETAE_1599(PF01695)
498217.ETAE_1115+
498217.ETAE_1626(+)(ER)
498217.ETAE_3532(<)
498217.ETAE_3446+
498217.ETAE_3284(+)(mitochondrial)
498217.ETAE_0404(<)
498217.ETAE_3193+
498217.ETAE_3061(<)not used
498217.ETAE_3067(PF01695)
498217.ETAE_2133+
498217.ETAE_1292(<)
498217.ETAE_1360(+)(ER)
498217.ETAE_1365+not used
498217.ETAE_2724(>)
498217.ETAE_1636(PF01695)
498217.ETAE_2036+
498217.ETAE_2584+
498217.ETAE_3181(>)
498217.ETAE_3185+
498217.ETAE_0714(+)(mitochondrial)
498217.ETAE_0179+
498217.ETAE_2937+
498217.ETAE_1877+
498217.ETAE_1134+
498217.ETAE_1135+
498217.ETAE_2735+
498217.ETAE_2732(PF01228)
498217.ETAE_3511+
498217.ETAE_2447(+)(mitochondrial)
498217.ETAE_2788+
498217.ETAE_1821+
498217.ETAE_3084(PF01695)
498217.ETAE_0204+
498217.ETAE_1789+
498217.ETAE_0340(+)(plastid)
498217.ETAE_2847+
498217.ETAE_1650+
498217.ETAE_2694+
498217.ETAE_2473+
498217.ETAE_2479(PF01695)
498217.ETAE_0693(+)(ER)
498217.ETAE_0354+
498217.ETAE_0359+
498217.ETAE_2910+
498217.ETAE_1241+
498217.ETAE_1245+
498217.ETAE_1463+
498217.ETAE_1469(<)
498217.ETAE_2269(>)
498217.ETAE_2268+
498217.ETAE_2469+not used
498217.ETAE_1669+
498217.ETAE_1816+
498217.ETAE_1933(+)(PF12588)
498217.ETAE_0785+
498217.ETAE_0226+
498217.ETAE_0038(PF01695)
498217.ETAE_0035+
498217.ETAE_0812(PF13332)
498217.ETAE_0811(>)
498217.ETAE_2172+
498217.ETAE_2672+
498217.ETAE_2077(+)(plastid)
498217.ETAE_1674(+)(>)
498217.ETAE_2412+
498217.ETAE_2413+
498217.ETAE_3237(+)(mitochondrial)
498217.ETAE_0787+not used
498217.ETAE_2009+
498217.ETAE_0250(<)
498217.ETAE_2897+
498217.ETAE_0025+
498217.ETAE_2438+
498217.ETAE_1082(<)
498217.ETAE_0805+
498217.ETAE_0806(PF01695)
498217.ETAE_1043+
498217.ETAE_3429+
498217.ETAE_1106(+)(plastid)
498217.ETAE_3421(PF01695)
498217.ETAE_3426(>)
498217.ETAE_2243(+)+
498217.ETAE_0796(+)(>)
498217.ETAE_0300(>)
498217.ETAE_0870+
498217.ETAE_0871(PF07720)
498217.ETAE_1692+
498217.ETAE_2347(<)
498217.ETAE_2508+
498217.ETAE_3109(>)
498217.ETAE_1870+
498217.ETAE_3103+
498217.ETAE_3213+
498217.ETAE_0315+
498217.ETAE_0006+
498217.ETAE_0869+
498217.ETAE_0867(PF07720)
498217.ETAE_0865+
498217.ETAE_0860+
498217.ETAE_1206+
498217.ETAE_0911(PF13332)
498217.ETAE_2422+
498217.ETAE_0647(<)
498217.ETAE_0489+
498217.ETAE_2351+
498217.ETAE_0070(+)
498217.ETAE_0108(+)
498217.ETAE_1184(+)
498217.ETAE_3333(+)
498217.ETAE_1217(+)
498217.ETAE_1435(+)
498217.ETAE_0855(+)
498217.ETAE_1729(+)
498217.ETAE_0679(+)
498217.ETAE_2290(+)not used
498217.ETAE_3348(+)
498217.ETAE_0587(+)
498217.ETAE_1855(+)not used
498217.ETAE_0291(+)
498217.ETAE_0067(+)
498217.ETAE_2535(+)
498217.ETAE_0116(+)
498217.ETAE_0937(+)
498217.ETAE_2990(+)
498217.ETAE_2755(+)
498217.ETAE_1862(+)
498217.ETAE_2286(+)
498217.ETAE_0947(+)
498217.ETAE_0942(+)
498217.ETAE_2963(+)
498217.ETAE_1413(+)not used
498217.ETAE_1419(+)
498217.ETAE_0725(+)
498217.ETAE_3387(+)
498217.ETAE_3386(+)
498217.ETAE_3039(+)
498217.ETAE_3033(+)
498217.ETAE_0545(+)
498217.ETAE_0137(+)
498217.ETAE_3224(+)
498217.ETAE_2817(+)not used
498217.ETAE_1395(+)
498217.ETAE_1509(+)not used
498217.ETAE_1771(+)
498217.ETAE_1773(+)not used
498217.ETAE_2159(+)
498217.ETAE_1602(+)not used
498217.ETAE_1607(+)
498217.ETAE_2555(+)
498217.ETAE_2981(+)
498217.ETAE_2550(+)
498217.ETAE_2552(+)not used
498217.ETAE_1955(+)
498217.ETAE_0559(+)
498217.ETAE_0385(+)
498217.ETAE_2805(+)
498217.ETAE_1765(+)not used
498217.ETAE_2708(+)
498217.ETAE_3541(+)
498217.ETAE_3542(+)
498217.ETAE_2236(+)
498217.ETAE_2565(+)
498217.ETAE_2567(+)
498217.ETAE_1197(+)
498217.ETAE_0395(+)
498217.ETAE_2716(+)not used
498217.ETAE_3537(+)
498217.ETAE_3442(+)
498217.ETAE_1621(+)
498217.ETAE_2823(+)
498217.ETAE_1105(+)
498217.ETAE_1103(+)
498217.ETAE_3290(+)
498217.ETAE_3274(+)
498217.ETAE_3189(+)
498217.ETAE_3076(+)
498217.ETAE_3073(+)
498217.ETAE_0501(+)
498217.ETAE_1151(+)
498217.ETAE_3366(+)
498217.ETAE_0371(+)
498217.ETAE_2939(+)
498217.ETAE_2979(+)
498217.ETAE_1971(+)
498217.ETAE_0990(+)
498217.ETAE_1006(+)
498217.ETAE_3514(+)
498217.ETAE_0770(+)
498217.ETAE_0347(+)
498217.ETAE_2048(+)
498217.ETAE_0833(+)
498217.ETAE_0838(+)
498217.ETAE_1802(+)
498217.ETAE_1120(+)
498217.ETAE_1019(+)
498217.ETAE_0468(+)
498217.ETAE_3509(+)
498217.ETAE_2058(+)
498217.ETAE_2270(+)
498217.ETAE_1907(+)not used
498217.ETAE_3253(+)
498217.ETAE_0690(+)
498217.ETAE_1924(+)
498217.ETAE_2872(+)
498217.ETAE_0821(+)
498217.ETAE_1482(+)
498217.ETAE_2687(+)
498217.ETAE_2042(+)
498217.ETAE_1801(+)
498217.ETAE_3130(+)
498217.ETAE_0222(+)
498217.ETAE_0225(+)
498217.ETAE_0324(+)not used
498217.ETAE_3501(+)
498217.ETAE_1473(+)
498217.ETAE_1477(+)
498217.ETAE_2671(+)
498217.ETAE_0664(+)not used
498217.ETAE_2093(+)
498217.ETAE_2415(+)
498217.ETAE_3417(+)
498217.ETAE_1929(+)
498217.ETAE_1810(+)
498217.ETAE_0801(+)
498217.ETAE_3123(+)
498217.ETAE_2796(+)
498217.ETAE_2082(+)
498217.ETAE_3424(+)
498217.ETAE_1901(+)
498217.ETAE_0521(+)
498217.ETAE_0792(+)
498217.ETAE_3462(+)
498217.ETAE_2032(+)
498217.ETAE_0875(+)
498217.ETAE_0872(+)
498217.ETAE_1452(+)
498217.ETAE_1457(+)
498217.ETAE_1055(+)
498217.ETAE_2581(+)
498217.ETAE_0648(+)
498217.ETAE_3434(+)
498217.ETAE_2216(+)
498217.ETAE_2502(+)
498217.ETAE_2215(+)
498217.ETAE_3102(+)
498217.ETAE_0477(+)
498217.ETAE_0866(+)
498217.ETAE_0914(+)
498217.ETAE_2518(+)
498217.ETAE_2516(+)
498217.ETAE_3188(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 1.1 (11/10 KEGG proteins)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.75 (6/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================