Effective results for Edwardsiella tarda EIB202 (eggnog40)
Summary
Number of putative secreted proteins: 388
- Predicted by EffectiveT3: 106 (high confidence), 182 (low confidence)
- Predicted by EffectiveCCBD: 20 within, 17 before, 19 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 54 proteins (0 high, 54 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, Type VI
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
---|---|---|---|---|---|
498217.ETAE_3160 | (>) | (mitochondrial); mitochondrial | |||
498217.ETAE_2361 | (PF03577) | ER | |||
498217.ETAE_0932 | (PF13415) | ER | |||
498217.ETAE_1716 | (<) | (ER) | |||
498217.ETAE_3483 | (+) | + | ER | ||
498217.ETAE_1234 | + | (mitochondrial); (plastid) | |||
498217.ETAE_1415 | + | (ER) | |||
498217.ETAE_2600 | (>) | ER | |||
498217.ETAE_1175 | + | (mitochondrial) | |||
498217.ETAE_2014 | (>) | mitochondrial | |||
498217.ETAE_0568 | + | (mitochondrial) | |||
498217.ETAE_0569 | (<) | (ER) | |||
498217.ETAE_1758 | (PF00328) | (mitochondrial) | |||
498217.ETAE_1589 | (PF00030) | ER | |||
498217.ETAE_0379 | + | (ER); (mitochondrial) | |||
498217.ETAE_2596 | (PF02112) | ER | |||
498217.ETAE_1916 | (PF00030) | ER | |||
498217.ETAE_0511 | (>) | ER | |||
498217.ETAE_1657 | (>) | ER | |||
498217.ETAE_2273 | (PF03577) | ER | |||
498217.ETAE_2918 | (PF02884) | (ER) | |||
498217.ETAE_2917 | (PF02884) | ER | |||
498217.ETAE_0820 | (PF13332) | (mitochondrial) | |||
498217.ETAE_2464 | (>) | ER | |||
498217.ETAE_0221 | + | ER | |||
498217.ETAE_1316 | (PF00328) | ER | |||
498217.ETAE_1314 | + | ER | |||
498217.ETAE_3425 | + | (mitochondrial); (plastid) | |||
498217.ETAE_1104 | (<) | ER | |||
498217.ETAE_1458 | + | ER | |||
498217.ETAE_1194 | (<) | ER | |||
498217.ETAE_0913 | (PF01228) | mitochondrial | |||
498217.ETAE_1733 | + | ER | |||
498217.ETAE_0260 | (PF01276) (PF03711) | ||||
498217.ETAE_3004 | (PF01276) (PF03711) | ||||
498217.ETAE_3006 | (PF01276) (PF03711) | ||||
498217.ETAE_1186 | + | (ER) | |||
498217.ETAE_1216 | (PF02796) | (plastid) | |||
498217.ETAE_1728 | + | (PF03577) | |||
498217.ETAE_2188 | (+) | ER | |||
498217.ETAE_0450 | (PF01228) | (mitochondrial) | |||
498217.ETAE_0284 | (PF01276) (PF03711) | ||||
498217.ETAE_0757 | (PF01276) (PF03711) | ||||
498217.ETAE_2771 | + | (plastid) | |||
498217.ETAE_1389 | (PF02796) | (plastid) | |||
498217.ETAE_1544 | + | (plastid) | |||
498217.ETAE_3054 | (PF02796) | (plastid) | |||
498217.ETAE_1375 | (+) | (mitochondrial) | |||
498217.ETAE_1598 | (PF02796) | (plastid) | |||
498217.ETAE_3066 | (PF02796) | (plastid) | |||
498217.ETAE_3064 | + | (>) | |||
498217.ETAE_0611 | (+) | (mitochondrial) | |||
498217.ETAE_0362 | (+) | ER | |||
498217.ETAE_2825 | (+) | mitochondrial | |||
498217.ETAE_1635 | (PF02796) | (plastid) | |||
498217.ETAE_3077 | (PF02796) | (plastid) | |||
498217.ETAE_2029 | (<) | (plastid) | |||
498217.ETAE_1822 | + | (plastid) | |||
498217.ETAE_1070 | (+) | ER | |||
498217.ETAE_2478 | (PF02796) | (plastid) | |||
498217.ETAE_2177 | (+) | (mitochondrial) | |||
498217.ETAE_0848 | (+) | (ER) | |||
498217.ETAE_2319 | (+) | (ER) | |||
498217.ETAE_0039 | (PF02796) | (plastid) | |||
498217.ETAE_0817 | + | (PF13332) | |||
498217.ETAE_0815 | + | (PF13332) | |||
498217.ETAE_1250 | (PF13436) | (mitochondrial) | |||
498217.ETAE_2921 | (+) | ER | |||
498217.ETAE_0259 | (+) | (PF01276) | (ER) | ||
498217.ETAE_2130 | + | plastid | |||
498217.ETAE_1315 | + | ER; not used | |||
498217.ETAE_0807 | (PF02796) | (plastid) | |||
498217.ETAE_3422 | (PF02796) | (plastid) | |||
498217.ETAE_2128 | + | plastid | |||
498217.ETAE_2966 | + | (plastid) | |||
498217.ETAE_0240 | (>) | (plastid) | |||
498217.ETAE_2885 | (<) | (ER) | |||
498217.ETAE_3003 | (PF01276) | ||||
498217.ETAE_1215 | (PF01695) | ||||
498217.ETAE_1211 | + | ||||
498217.ETAE_0853 | + | ||||
498217.ETAE_0856 | + | ||||
498217.ETAE_0854 | + | ||||
498217.ETAE_1504 | + | not used | |||
498217.ETAE_2635 | + | ||||
498217.ETAE_2404 | (<) | ||||
498217.ETAE_1724 | (>) | ||||
498217.ETAE_2740 | + | ||||
498217.ETAE_2182 | (PF01228) | ||||
498217.ETAE_0674 | (+) | (mitochondrial) | |||
498217.ETAE_0671 | + | ||||
498217.ETAE_3166 | + | ||||
498217.ETAE_2363 | (<) | ||||
498217.ETAE_1982 | + | ||||
498217.ETAE_3339 | + | ||||
498217.ETAE_0118 | + | ||||
498217.ETAE_1228 | (+) | (plastid) | |||
498217.ETAE_1227 | + | ||||
498217.ETAE_1710 | + | ||||
498217.ETAE_2571 | + | ||||
498217.ETAE_3020 | + | ||||
498217.ETAE_3152 | + | ||||
498217.ETAE_1235 | + | ||||
498217.ETAE_2766 | + | ||||
498217.ETAE_2147 | + | ||||
498217.ETAE_2142 | + | ||||
498217.ETAE_3364 | (+) | (plastid) | |||
498217.ETAE_3362 | + | ||||
498217.ETAE_3149 | + | ||||
498217.ETAE_0044 | + | ||||
498217.ETAE_2815 | (>) | ||||
498217.ETAE_1390 | (PF01695) | ||||
498217.ETAE_1555 | + | ||||
498217.ETAE_3392 | + | ||||
498217.ETAE_2398 | (+) | (mitochondrial) | |||
498217.ETAE_2396 | (+) | (plastid) | |||
498217.ETAE_0091 | + | ||||
498217.ETAE_1382 | + | ||||
498217.ETAE_0896 | + | ||||
498217.ETAE_0897 | (PF01228) | ||||
498217.ETAE_2946 | + | ||||
498217.ETAE_2706 | + | ||||
498217.ETAE_2018 | + | ||||
498217.ETAE_3545 | + | ||||
498217.ETAE_2238 | + | ||||
498217.ETAE_3053 | (PF01695) | ||||
498217.ETAE_0562 | + | not used | |||
498217.ETAE_0398 | + | ||||
498217.ETAE_0087 | (+) | (mitochondrial) | |||
498217.ETAE_2833 | (+) | (plastid) | |||
498217.ETAE_2955 | + | not used | |||
498217.ETAE_1289 | + | ||||
498217.ETAE_1282 | (+) | (mitochondrial) | |||
498217.ETAE_1376 | (+) | (mitochondrial) | |||
498217.ETAE_0888 | (+) | plastid | |||
498217.ETAE_1575 | + | ||||
498217.ETAE_1599 | (PF01695) | ||||
498217.ETAE_1115 | + | ||||
498217.ETAE_1626 | (+) | (ER) | |||
498217.ETAE_3532 | (<) | ||||
498217.ETAE_3446 | + | ||||
498217.ETAE_3284 | (+) | (mitochondrial) | |||
498217.ETAE_0404 | (<) | ||||
498217.ETAE_3193 | + | ||||
498217.ETAE_3061 | (<) | not used | |||
498217.ETAE_3067 | (PF01695) | ||||
498217.ETAE_2133 | + | ||||
498217.ETAE_1292 | (<) | ||||
498217.ETAE_1360 | (+) | (ER) | |||
498217.ETAE_1365 | + | not used | |||
498217.ETAE_2724 | (>) | ||||
498217.ETAE_1636 | (PF01695) | ||||
498217.ETAE_2036 | + | ||||
498217.ETAE_2584 | + | ||||
498217.ETAE_3181 | (>) | ||||
498217.ETAE_3185 | + | ||||
498217.ETAE_0714 | (+) | (mitochondrial) | |||
498217.ETAE_0179 | + | ||||
498217.ETAE_2937 | + | ||||
498217.ETAE_1877 | + | ||||
498217.ETAE_1134 | + | ||||
498217.ETAE_1135 | + | ||||
498217.ETAE_2735 | + | ||||
498217.ETAE_2732 | (PF01228) | ||||
498217.ETAE_3511 | + | ||||
498217.ETAE_2447 | (+) | (mitochondrial) | |||
498217.ETAE_2788 | + | ||||
498217.ETAE_1821 | + | ||||
498217.ETAE_3084 | (PF01695) | ||||
498217.ETAE_0204 | + | ||||
498217.ETAE_1789 | + | ||||
498217.ETAE_0340 | (+) | (plastid) | |||
498217.ETAE_2847 | + | ||||
498217.ETAE_1650 | + | ||||
498217.ETAE_2694 | + | ||||
498217.ETAE_2473 | + | ||||
498217.ETAE_2479 | (PF01695) | ||||
498217.ETAE_0693 | (+) | (ER) | |||
498217.ETAE_0354 | + | ||||
498217.ETAE_0359 | + | ||||
498217.ETAE_2910 | + | ||||
498217.ETAE_1241 | + | ||||
498217.ETAE_1245 | + | ||||
498217.ETAE_1463 | + | ||||
498217.ETAE_1469 | (<) | ||||
498217.ETAE_2269 | (>) | ||||
498217.ETAE_2268 | + | ||||
498217.ETAE_2469 | + | not used | |||
498217.ETAE_1669 | + | ||||
498217.ETAE_1816 | + | ||||
498217.ETAE_1933 | (+) | (PF12588) | |||
498217.ETAE_0785 | + | ||||
498217.ETAE_0226 | + | ||||
498217.ETAE_0038 | (PF01695) | ||||
498217.ETAE_0035 | + | ||||
498217.ETAE_0812 | (PF13332) | ||||
498217.ETAE_0811 | (>) | ||||
498217.ETAE_2172 | + | ||||
498217.ETAE_2672 | + | ||||
498217.ETAE_2077 | (+) | (plastid) | |||
498217.ETAE_1674 | (+) | (>) | |||
498217.ETAE_2412 | + | ||||
498217.ETAE_2413 | + | ||||
498217.ETAE_3237 | (+) | (mitochondrial) | |||
498217.ETAE_0787 | + | not used | |||
498217.ETAE_2009 | + | ||||
498217.ETAE_0250 | (<) | ||||
498217.ETAE_2897 | + | ||||
498217.ETAE_0025 | + | ||||
498217.ETAE_2438 | + | ||||
498217.ETAE_1082 | (<) | ||||
498217.ETAE_0805 | + | ||||
498217.ETAE_0806 | (PF01695) | ||||
498217.ETAE_1043 | + | ||||
498217.ETAE_3429 | + | ||||
498217.ETAE_1106 | (+) | (plastid) | |||
498217.ETAE_3421 | (PF01695) | ||||
498217.ETAE_3426 | (>) | ||||
498217.ETAE_2243 | (+) | + | |||
498217.ETAE_0796 | (+) | (>) | |||
498217.ETAE_0300 | (>) | ||||
498217.ETAE_0870 | + | ||||
498217.ETAE_0871 | (PF07720) | ||||
498217.ETAE_1692 | + | ||||
498217.ETAE_2347 | (<) | ||||
498217.ETAE_2508 | + | ||||
498217.ETAE_3109 | (>) | ||||
498217.ETAE_1870 | + | ||||
498217.ETAE_3103 | + | ||||
498217.ETAE_3213 | + | ||||
498217.ETAE_0315 | + | ||||
498217.ETAE_0006 | + | ||||
498217.ETAE_0869 | + | ||||
498217.ETAE_0867 | (PF07720) | ||||
498217.ETAE_0865 | + | ||||
498217.ETAE_0860 | + | ||||
498217.ETAE_1206 | + | ||||
498217.ETAE_0911 | (PF13332) | ||||
498217.ETAE_2422 | + | ||||
498217.ETAE_0647 | (<) | ||||
498217.ETAE_0489 | + | ||||
498217.ETAE_2351 | + | ||||
498217.ETAE_0070 | (+) | ||||
498217.ETAE_0108 | (+) | ||||
498217.ETAE_1184 | (+) | ||||
498217.ETAE_3333 | (+) | ||||
498217.ETAE_1217 | (+) | ||||
498217.ETAE_1435 | (+) | ||||
498217.ETAE_0855 | (+) | ||||
498217.ETAE_1729 | (+) | ||||
498217.ETAE_0679 | (+) | ||||
498217.ETAE_2290 | (+) | not used | |||
498217.ETAE_3348 | (+) | ||||
498217.ETAE_0587 | (+) | ||||
498217.ETAE_1855 | (+) | not used | |||
498217.ETAE_0291 | (+) | ||||
498217.ETAE_0067 | (+) | ||||
498217.ETAE_2535 | (+) | ||||
498217.ETAE_0116 | (+) | ||||
498217.ETAE_0937 | (+) | ||||
498217.ETAE_2990 | (+) | ||||
498217.ETAE_2755 | (+) | ||||
498217.ETAE_1862 | (+) | ||||
498217.ETAE_2286 | (+) | ||||
498217.ETAE_0947 | (+) | ||||
498217.ETAE_0942 | (+) | ||||
498217.ETAE_2963 | (+) | ||||
498217.ETAE_1413 | (+) | not used | |||
498217.ETAE_1419 | (+) | ||||
498217.ETAE_0725 | (+) | ||||
498217.ETAE_3387 | (+) | ||||
498217.ETAE_3386 | (+) | ||||
498217.ETAE_3039 | (+) | ||||
498217.ETAE_3033 | (+) | ||||
498217.ETAE_0545 | (+) | ||||
498217.ETAE_0137 | (+) | ||||
498217.ETAE_3224 | (+) | ||||
498217.ETAE_2817 | (+) | not used | |||
498217.ETAE_1395 | (+) | ||||
498217.ETAE_1509 | (+) | not used | |||
498217.ETAE_1771 | (+) | ||||
498217.ETAE_1773 | (+) | not used | |||
498217.ETAE_2159 | (+) | ||||
498217.ETAE_1602 | (+) | not used | |||
498217.ETAE_1607 | (+) | ||||
498217.ETAE_2555 | (+) | ||||
498217.ETAE_2981 | (+) | ||||
498217.ETAE_2550 | (+) | ||||
498217.ETAE_2552 | (+) | not used | |||
498217.ETAE_1955 | (+) | ||||
498217.ETAE_0559 | (+) | ||||
498217.ETAE_0385 | (+) | ||||
498217.ETAE_2805 | (+) | ||||
498217.ETAE_1765 | (+) | not used | |||
498217.ETAE_2708 | (+) | ||||
498217.ETAE_3541 | (+) | ||||
498217.ETAE_3542 | (+) | ||||
498217.ETAE_2236 | (+) | ||||
498217.ETAE_2565 | (+) | ||||
498217.ETAE_2567 | (+) | ||||
498217.ETAE_1197 | (+) | ||||
498217.ETAE_0395 | (+) | ||||
498217.ETAE_2716 | (+) | not used | |||
498217.ETAE_3537 | (+) | ||||
498217.ETAE_3442 | (+) | ||||
498217.ETAE_1621 | (+) | ||||
498217.ETAE_2823 | (+) | ||||
498217.ETAE_1105 | (+) | ||||
498217.ETAE_1103 | (+) | ||||
498217.ETAE_3290 | (+) | ||||
498217.ETAE_3274 | (+) | ||||
498217.ETAE_3189 | (+) | ||||
498217.ETAE_3076 | (+) | ||||
498217.ETAE_3073 | (+) | ||||
498217.ETAE_0501 | (+) | ||||
498217.ETAE_1151 | (+) | ||||
498217.ETAE_3366 | (+) | ||||
498217.ETAE_0371 | (+) | ||||
498217.ETAE_2939 | (+) | ||||
498217.ETAE_2979 | (+) | ||||
498217.ETAE_1971 | (+) | ||||
498217.ETAE_0990 | (+) | ||||
498217.ETAE_1006 | (+) | ||||
498217.ETAE_3514 | (+) | ||||
498217.ETAE_0770 | (+) | ||||
498217.ETAE_0347 | (+) | ||||
498217.ETAE_2048 | (+) | ||||
498217.ETAE_0833 | (+) | ||||
498217.ETAE_0838 | (+) | ||||
498217.ETAE_1802 | (+) | ||||
498217.ETAE_1120 | (+) | ||||
498217.ETAE_1019 | (+) | ||||
498217.ETAE_0468 | (+) | ||||
498217.ETAE_3509 | (+) | ||||
498217.ETAE_2058 | (+) | ||||
498217.ETAE_2270 | (+) | ||||
498217.ETAE_1907 | (+) | not used | |||
498217.ETAE_3253 | (+) | ||||
498217.ETAE_0690 | (+) | ||||
498217.ETAE_1924 | (+) | ||||
498217.ETAE_2872 | (+) | ||||
498217.ETAE_0821 | (+) | ||||
498217.ETAE_1482 | (+) | ||||
498217.ETAE_2687 | (+) | ||||
498217.ETAE_2042 | (+) | ||||
498217.ETAE_1801 | (+) | ||||
498217.ETAE_3130 | (+) | ||||
498217.ETAE_0222 | (+) | ||||
498217.ETAE_0225 | (+) | ||||
498217.ETAE_0324 | (+) | not used | |||
498217.ETAE_3501 | (+) | ||||
498217.ETAE_1473 | (+) | ||||
498217.ETAE_1477 | (+) | ||||
498217.ETAE_2671 | (+) | ||||
498217.ETAE_0664 | (+) | not used | |||
498217.ETAE_2093 | (+) | ||||
498217.ETAE_2415 | (+) | ||||
498217.ETAE_3417 | (+) | ||||
498217.ETAE_1929 | (+) | ||||
498217.ETAE_1810 | (+) | ||||
498217.ETAE_0801 | (+) | ||||
498217.ETAE_3123 | (+) | ||||
498217.ETAE_2796 | (+) | ||||
498217.ETAE_2082 | (+) | ||||
498217.ETAE_3424 | (+) | ||||
498217.ETAE_1901 | (+) | ||||
498217.ETAE_0521 | (+) | ||||
498217.ETAE_0792 | (+) | ||||
498217.ETAE_3462 | (+) | ||||
498217.ETAE_2032 | (+) | ||||
498217.ETAE_0875 | (+) | ||||
498217.ETAE_0872 | (+) | ||||
498217.ETAE_1452 | (+) | ||||
498217.ETAE_1457 | (+) | ||||
498217.ETAE_1055 | (+) | ||||
498217.ETAE_2581 | (+) | ||||
498217.ETAE_0648 | (+) | ||||
498217.ETAE_3434 | (+) | ||||
498217.ETAE_2216 | (+) | ||||
498217.ETAE_2502 | (+) | ||||
498217.ETAE_2215 | (+) | ||||
498217.ETAE_3102 | (+) | ||||
498217.ETAE_0477 | (+) | ||||
498217.ETAE_0866 | (+) | ||||
498217.ETAE_0914 | (+) | ||||
498217.ETAE_2518 | (+) | ||||
498217.ETAE_2516 | (+) | ||||
498217.ETAE_3188 | (+) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
- EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
- EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: YES (FDR = 12.5 %)
Estimated copy number = 1.1 (11/10 KEGG proteins)
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: YES (FDR = 7.7 %)
Estimated copy number = 0.75 (6/8 KEGG proteins)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 1.1 (11/10 KEGG proteins)
Estimated copy number = 0.75 (6/8 KEGG proteins)