Effective results for Clostridium hiranonis DSM 13275 (eggnog40)

Summary

Number of putative secreted proteins: 42
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 42 proteins (1 high, 41 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
500633.CLOHIR_02139				(PF00163)	mitochondrial
500633.CLOHIR_02131				(PF09991)	ER
500633.CLOHIR_01603				(PF00163)	(mitochondrial)
500633.CLOHIR_01986				(PF12821)	ER
500633.CLOHIR_02262				(PF09991)	ER
500633.CLOHIR_00213				(PF01693)	mitochondrial
500633.CLOHIR_01783				(PF12821)	(ER)
500633.CLOHIR_01002				(PF12821)	ER
500633.CLOHIR_00614				(PF16189) (PF16188)	(mitochondrial)
500633.CLOHIR_00056				(PF11070)	ER
500633.CLOHIR_00063				(PF01228) (PF02901)
500633.CLOHIR_00931				(PF13304)	(mitochondrial)
500633.CLOHIR_00726				(PF01228) (PF02901)
500633.CLOHIR_00590				(PF16189) (PF16188)
500633.CLOHIR_00115				(PF13167)	(mitochondrial)
500633.CLOHIR_00977				(PF16189) (PF16188)
500633.CLOHIR_00400				(PF01228) (PF02901)
500633.CLOHIR_00436				(PF16189) (PF16188)
500633.CLOHIR_01853				(PF01228) (PF02901)
500633.CLOHIR_00496				(PF01228) (PF02901)
500633.CLOHIR_00061				(PF13304)
500633.CLOHIR_00930				(PF13304)
500633.CLOHIR_00934				(PF13304)
500633.CLOHIR_00918				(PF07516)
500633.CLOHIR_00031				(PF07516)
500633.CLOHIR_00032				(PF07516)	not used
500633.CLOHIR_00963				PF04572
500633.CLOHIR_01507				(PF13304)
500633.CLOHIR_02089				(PF13167)	not used
500633.CLOHIR_01409				(PF10544)
500633.CLOHIR_02213				(PF12640)
500633.CLOHIR_00443				(PF01693)
500633.CLOHIR_02207				(PF14512)
500633.CLOHIR_02041				(PF14512)
500633.CLOHIR_00950				(PF13304)
500633.CLOHIR_01860				(PF13167)
500633.CLOHIR_00611				(PF10544)
500633.CLOHIR_00058				(PF00958)
500633.CLOHIR_00057				(PF00958)
500633.CLOHIR_00878				(PF01991)
500633.CLOHIR_00519				(PF13304)
500633.CLOHIR_00927				(PF13304)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================