Effective results for Citrobacter youngae ATCC 29220 (eggnog40)

Summary

Number of putative secreted proteins: 832
- Predicted by EffectiveT3: 190 (high confidence), 348 (low confidence)
- Predicted by EffectiveCCBD: 37 within, 27 before, 41 behind expected region 25..70aa
- Predicted by T4SEpre: 90
- Predicted by EffectiveELD: 29 eukaryotic-like domains, contained in 147 proteins (0 high, 147 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
500640.CIT292_06959++ER
500640.CIT292_06346(PF03313) (PF03315)(mitochondrial)
500640.CIT292_06317(PF08125) (PF01232)(mitochondrial)
500640.CIT292_08631+(>)plastid
500640.CIT292_09216(>)ER
500640.CIT292_09217(PF03797)ER
500640.CIT292_10392(PF08125) (PF01232)(mitochondrial)
500640.CIT292_06490+ER
500640.CIT292_06077+(mitochondrial); plastid
500640.CIT292_10677(PF00577)ER
500640.CIT292_08133(>)ER
500640.CIT292_10918(PF00465)(mitochondrial)
500640.CIT292_09008+(mitochondrial)
500640.CIT292_06803(PF01204)(mitochondrial)
500640.CIT292_09484+ER
500640.CIT292_09712(<)ER
500640.CIT292_09717(PF00577)ER
500640.CIT292_09718(PF00345)ER
500640.CIT292_06487(<)ER
500640.CIT292_06273(PF00384)mitochondrial; (mitochondrial)
500640.CIT292_06668+(mitochondrial); (plastid)
500640.CIT292_09873+(mitochondrial)
500640.CIT292_08477(PF05231)ER
500640.CIT292_07796(PF16327)ER
500640.CIT292_09701(PF03222)(ER)
500640.CIT292_06589(PF00345)ER
500640.CIT292_10915(PF00939)ER
500640.CIT292_10355+ER; plastid
500640.CIT292_06614+(ER)
500640.CIT292_07312(>)ER
500640.CIT292_10614+mitochondrial; (mitochondrial)
500640.CIT292_07180(PF00465)mitochondrial; ER
500640.CIT292_07451+ER; (ER)
500640.CIT292_08045(PF00939)ER
500640.CIT292_07234+ER
500640.CIT292_07239+ER
500640.CIT292_09249+(PF08125) (PF01232)
500640.CIT292_08465(>)ER
500640.CIT292_08469(PF03797)ER; (ER)
500640.CIT292_10296(PF01204)ER
500640.CIT292_09733(<)(ER)
500640.CIT292_05961(PF13347)mitochondrial
500640.CIT292_06590(PF00577)ER
500640.CIT292_06283(PF16327)ER
500640.CIT292_06285(PF03918)ER
500640.CIT292_06276+(ER)
500640.CIT292_08073+ER
500640.CIT292_08671(PF00577)(ER)
500640.CIT292_08925+ER
500640.CIT292_09031+ER
500640.CIT292_10023+ER
500640.CIT292_06454(PF05231)ER
500640.CIT292_10331(PF03797)(mitochondrial)
500640.CIT292_10934(<)(ER)
500640.CIT292_10036+(ER)
500640.CIT292_08719(PF03797)ER
500640.CIT292_08398+(ER); ER
500640.CIT292_10742(PF03222)(ER); ER
500640.CIT292_07521(PF00384)(mitochondrial); mitochondrial
500640.CIT292_10815(PF01204)ER
500640.CIT292_06712(>)(mitochondrial); ER
500640.CIT292_07396(>)(ER)
500640.CIT292_08011(PF00939)ER
500640.CIT292_10483+ER
500640.CIT292_10865+(mitochondrial)
500640.CIT292_06367(>)mitochondrial
500640.CIT292_07417(>)ER
500640.CIT292_07361(PF00384)mitochondrial; (mitochondrial)
500640.CIT292_08822+(mitochondrial)
500640.CIT292_08912(+)(PF00939)ER
500640.CIT292_08911(PF00939)ER
500640.CIT292_09173+ER
500640.CIT292_09172+ER
500640.CIT292_10615+mitochondrial
500640.CIT292_10787(PF03313) (PF03315)(plastid)
500640.CIT292_09775(PF03313) (PF03315)(plastid)
500640.CIT292_08213(PF00939)ER
500640.CIT292_10870(PF00939)ER
500640.CIT292_06394(PF00577)ER
500640.CIT292_06393(PF00345)ER
500640.CIT292_06773+ER
500640.CIT292_06081+ER
500640.CIT292_10385+ER
500640.CIT292_07599+ER
500640.CIT292_09501(PF00345)(ER)
500640.CIT292_07716(>)mitochondrial
500640.CIT292_10511(PF05231)ER
500640.CIT292_10848(PF03797)ER
500640.CIT292_06747(>)ER
500640.CIT292_07161(PF00939)ER
500640.CIT292_09237+(ER)
500640.CIT292_09372(PF13347)ER
500640.CIT292_10678(PF00345)ER
500640.CIT292_06998+ER
500640.CIT292_11117(>)ER
500640.CIT292_09412(<)ER
500640.CIT292_09569+mitochondrial
500640.CIT292_09894(PF05231)(ER)
500640.CIT292_09298(>)ER
500640.CIT292_10550+ER
500640.CIT292_07210+ER
500640.CIT292_11124(PF00384)(mitochondrial); mitochondrial
500640.CIT292_07815+ER
500640.CIT292_11059(PF00345)ER
500640.CIT292_08793+ER
500640.CIT292_07252+ER
500640.CIT292_06790(<)ER
500640.CIT292_10452(PF01116)(mitochondrial)
500640.CIT292_06029+ER
500640.CIT292_07135(>)mitochondrial; (mitochondrial)
500640.CIT292_07794(PF03918)ER
500640.CIT292_11131(PF16327)ER
500640.CIT292_10397+(mitochondrial)
500640.CIT292_09882+ER
500640.CIT292_06522(PF10662)mitochondrial
500640.CIT292_09309+mitochondrial; (mitochondrial)
500640.CIT292_10042(<)ER
500640.CIT292_06017(PF05231)ER
500640.CIT292_08299(PF00345)ER
500640.CIT292_08298(PF00577)ER; (ER)
500640.CIT292_07656(PF00345)ER
500640.CIT292_07658(PF00577)(mitochondrial)
500640.CIT292_07659(+)+(PF00345)(plastid)
500640.CIT292_11140(>)(mitochondrial)
500640.CIT292_10655(>)ER
500640.CIT292_08420+(ER)
500640.CIT292_08888+ER
500640.CIT292_09981+(mitochondrial)
500640.CIT292_10728+ER
500640.CIT292_10892+ER
500640.CIT292_06314+(ER); ER
500640.CIT292_06315+ER
500640.CIT292_10242(>)ER
500640.CIT292_07667+mitochondrial; not used
500640.CIT292_08632+(plastid)
500640.CIT292_07205(PF08125) (PF01232)
500640.CIT292_10155+(>)
500640.CIT292_07703+(mitochondrial)
500640.CIT292_07471+(mitochondrial)
500640.CIT292_10417(<)(mitochondrial)
500640.CIT292_05904(+)ER
500640.CIT292_08820+(plastid)
500640.CIT292_09581+(PF13347)
500640.CIT292_08615+(plastid)
500640.CIT292_08870(<)(PF00465)
500640.CIT292_08093(PF05683) (PF05681)
500640.CIT292_06272++
500640.CIT292_07752+(mitochondrial)
500640.CIT292_06261(+)(ER)
500640.CIT292_10340(+)ER
500640.CIT292_10582(<)+
500640.CIT292_09660+(plastid)
500640.CIT292_08701(+)(mitochondrial)
500640.CIT292_06631++
500640.CIT292_06634+plastid
500640.CIT292_06724+plastid
500640.CIT292_10107+(mitochondrial)
500640.CIT292_08484(+)mitochondrial
500640.CIT292_06841(+)(mitochondrial)
500640.CIT292_10329(+)(ER)
500640.CIT292_09689+(mitochondrial); not used
500640.CIT292_11201(+)(mitochondrial)
500640.CIT292_07974+(PF00343)
500640.CIT292_11023++
500640.CIT292_07379+(PF03797)
500640.CIT292_07570(<)ER; not used
500640.CIT292_10317+(PF03222)
500640.CIT292_06766(PF03313) (PF03315)
500640.CIT292_06169+(mitochondrial)
500640.CIT292_10783+(PF03222)
500640.CIT292_10499(+)mitochondrial
500640.CIT292_07506(+)(mitochondrial); (plastid)
500640.CIT292_07170(PF08125) (PF01232)
500640.CIT292_08038++
500640.CIT292_08961+(plastid)
500640.CIT292_06569(+)(mitochondrial)
500640.CIT292_07299+(mitochondrial)
500640.CIT292_11076(PF05683) (PF05681)
500640.CIT292_07610+plastid
500640.CIT292_07587(+)mitochondrial
500640.CIT292_09970+(>)
500640.CIT292_09794(+)(mitochondrial)
500640.CIT292_08380(+)(mitochondrial)
500640.CIT292_08836(PF13347)(ER)
500640.CIT292_09294(PF08125) (PF01232)
500640.CIT292_06057(PF10662)(mitochondrial)
500640.CIT292_11119(PF01116)(mitochondrial)
500640.CIT292_10448+(plastid)
500640.CIT292_09891(+)(mitochondrial)
500640.CIT292_10992+(plastid)
500640.CIT292_06321(PF00384)(mitochondrial)
500640.CIT292_06216+(plastid)
500640.CIT292_10535+(mitochondrial)
500640.CIT292_11125(<)(PF00384)
500640.CIT292_07251(PF05683) (PF05681)
500640.CIT292_08957(+)ER
500640.CIT292_09312+(mitochondrial); not used
500640.CIT292_10982+(PF00345)
500640.CIT292_11130(PF03918)(mitochondrial)
500640.CIT292_08029++
500640.CIT292_06526(PF00465)(mitochondrial)
500640.CIT292_06011+(mitochondrial)
500640.CIT292_06656(PF03222)(ER)
500640.CIT292_07349(+)(ER)
500640.CIT292_10688+(mitochondrial)
500640.CIT292_08088(PF05034) (PF07476)
500640.CIT292_06513+(PF00384)
500640.CIT292_10891(+)mitochondrial; (mitochondrial)
500640.CIT292_07662+
500640.CIT292_08635(+)(plastid)
500640.CIT292_09696+
500640.CIT292_08980+not used
500640.CIT292_09212+
500640.CIT292_08857(PF00384)
500640.CIT292_08859+
500640.CIT292_09452+
500640.CIT292_09459(<)
500640.CIT292_10150(>)
500640.CIT292_07702+
500640.CIT292_06870(PF00465)
500640.CIT292_08678+
500640.CIT292_08540+
500640.CIT292_10370(+)(PF13347)
500640.CIT292_10377(+)(PF00465)
500640.CIT292_06079(>)
500640.CIT292_06676+
500640.CIT292_06678+
500640.CIT292_09975+
500640.CIT292_07075+
500640.CIT292_11301+
500640.CIT292_07679+
500640.CIT292_07674(PF03797)
500640.CIT292_07695+
500640.CIT292_08622+
500640.CIT292_08623+
500640.CIT292_08624+
500640.CIT292_08533(<)
500640.CIT292_07855(+)(mitochondrial)
500640.CIT292_09268(+)mitochondrial; not used
500640.CIT292_09862+
500640.CIT292_10410+
500640.CIT292_09714(PF00345)
500640.CIT292_10967+
500640.CIT292_06909+
500640.CIT292_06065(PF00465)
500640.CIT292_08646+
500640.CIT292_10643+
500640.CIT292_10827+
500640.CIT292_07920+
500640.CIT292_08611+
500640.CIT292_08504(<)
500640.CIT292_08271+
500640.CIT292_09673+
500640.CIT292_09275(+)(plastid)
500640.CIT292_09277+
500640.CIT292_09271+
500640.CIT292_08872+
500640.CIT292_09878+
500640.CIT292_08470+
500640.CIT292_09471(PF13347)
500640.CIT292_10175+
500640.CIT292_10174(PF00834)
500640.CIT292_09705+
500640.CIT292_10354+
500640.CIT292_10823+
500640.CIT292_06193+not used
500640.CIT292_07761+
500640.CIT292_08048+
500640.CIT292_08041+
500640.CIT292_08594+
500640.CIT292_09392+
500640.CIT292_06907+not used
500640.CIT292_09240(PF03222)
500640.CIT292_07896+not used
500640.CIT292_10293(>)
500640.CIT292_09731(+)+
500640.CIT292_09730+
500640.CIT292_10765+
500640.CIT292_10761(PF01116)
500640.CIT292_10762+
500640.CIT292_10349(<)
500640.CIT292_10832(PF00465)
500640.CIT292_10836(PF00465)
500640.CIT292_09829(+)(mitochondrial); not used
500640.CIT292_06886+
500640.CIT292_08432+
500640.CIT292_06884+
500640.CIT292_06739+
500640.CIT292_08320+
500640.CIT292_07424+
500640.CIT292_09389+
500640.CIT292_08253+
500640.CIT292_08670(PF00345)
500640.CIT292_11192+
500640.CIT292_11197+
500640.CIT292_09252(+)(ER); not used
500640.CIT292_09812+
500640.CIT292_09813+
500640.CIT292_09653(PF00465)
500640.CIT292_08922+
500640.CIT292_06852(PF00384)
500640.CIT292_09724(+)(plastid)
500640.CIT292_09035+
500640.CIT292_09030+
500640.CIT292_10024+
500640.CIT292_08450+
500640.CIT292_10334(PF00384)
500640.CIT292_10939(PF00384)
500640.CIT292_11060(PF00577)
500640.CIT292_06632(+)(plastid)
500640.CIT292_10070+
500640.CIT292_07434+
500640.CIT292_11034+
500640.CIT292_07891(+)+
500640.CIT292_09535+
500640.CIT292_09627(PF01116)
500640.CIT292_09646+
500640.CIT292_08930(PF13347)
500640.CIT292_08939(PF00465)
500640.CIT292_08600(>)
500640.CIT292_07585(+)mitochondrial; not used
500640.CIT292_10748(+)(mitochondrial)
500640.CIT292_10325+not used
500640.CIT292_10321+
500640.CIT292_10925+
500640.CIT292_06623(+)(plastid)
500640.CIT292_06711(+)(plastid)
500640.CIT292_10045+
500640.CIT292_10044+
500640.CIT292_10922(>)
500640.CIT292_09967+
500640.CIT292_07408+
500640.CIT292_08467+
500640.CIT292_08109(<)
500640.CIT292_06502+
500640.CIT292_08239(+)(PF00465)
500640.CIT292_08238+
500640.CIT292_07375+
500640.CIT292_07576+
500640.CIT292_08831+
500640.CIT292_08835(PF13347)
500640.CIT292_08345+
500640.CIT292_08900+
500640.CIT292_10007+
500640.CIT292_10035+
500640.CIT292_06362+
500640.CIT292_08487(>)
500640.CIT292_10191(>)
500640.CIT292_06164+
500640.CIT292_07214(PF00384)
500640.CIT292_07416(+)(mitochondrial)
500640.CIT292_08102+
500640.CIT292_10721+
500640.CIT292_07707+
500640.CIT292_07708+
500640.CIT292_07960+
500640.CIT292_08647+
500640.CIT292_08734(<)
500640.CIT292_09198+
500640.CIT292_06230+
500640.CIT292_08131(+)(mitochondrial)
500640.CIT292_09178+
500640.CIT292_07334+
500640.CIT292_06956(>)
500640.CIT292_10789(PF03313)
500640.CIT292_10786+
500640.CIT292_09772(PF00465)
500640.CIT292_09776+
500640.CIT292_10995+
500640.CIT292_10658+
500640.CIT292_07392+
500640.CIT292_10871(PF05683)
500640.CIT292_10872(+)(PF05681)
500640.CIT292_06260+
500640.CIT292_10305+
500640.CIT292_06370+not used
500640.CIT292_08229+
500640.CIT292_06777+
500640.CIT292_10833+
500640.CIT292_08424(>)
500640.CIT292_11004+not used
500640.CIT292_08848+
500640.CIT292_07179(+)(PF00465)
500640.CIT292_07174+
500640.CIT292_07287(+)(mitochondrial)
500640.CIT292_10220+
500640.CIT292_11008+(<)not used
500640.CIT292_07911(PF00384)
500640.CIT292_07350+
500640.CIT292_07352+
500640.CIT292_07948+
500640.CIT292_08690+
500640.CIT292_08366+
500640.CIT292_08601(>)
500640.CIT292_08369(>)not used
500640.CIT292_08740(>)
500640.CIT292_09617+
500640.CIT292_06528(+)(plastid)
500640.CIT292_09185+
500640.CIT292_09166+
500640.CIT292_09500(PF00577)
500640.CIT292_06963(PF00384)
500640.CIT292_10141+
500640.CIT292_05992(PF07678)
500640.CIT292_09768(+)(mitochondrial); not used
500640.CIT292_09769+
500640.CIT292_06419+
500640.CIT292_07710+
500640.CIT292_10208(PF00343)
500640.CIT292_10202+
500640.CIT292_06809+
500640.CIT292_07652+
500640.CIT292_08858(PF00384)
500640.CIT292_06982(PF03797)
500640.CIT292_06980(PF03797)
500640.CIT292_10849(+)(PF03797)
500640.CIT292_06741+
500640.CIT292_11024+
500640.CIT292_07296(+)plastid
500640.CIT292_07973(PF00343)
500640.CIT292_11056+
500640.CIT292_09910(>)
500640.CIT292_07107(<)
500640.CIT292_08107(+)(mitochondrial); not used
500640.CIT292_07764+
500640.CIT292_07765+
500640.CIT292_08322+
500640.CIT292_08378+
500640.CIT292_09917+
500640.CIT292_09378+
500640.CIT292_08200+
500640.CIT292_09371(+)(mitochondrial)
500640.CIT292_08974(>)
500640.CIT292_08976+
500640.CIT292_09156(>)
500640.CIT292_09151+
500640.CIT292_06974+
500640.CIT292_10479(PF03797)
500640.CIT292_07524+
500640.CIT292_10696+
500640.CIT292_10217(PF00343)
500640.CIT292_06560(>)
500640.CIT292_06353+
500640.CIT292_09524+
500640.CIT292_06757(+)(plastid)
500640.CIT292_08337+
500640.CIT292_07110+
500640.CIT292_07119(PF00384)
500640.CIT292_07118(PF00384)
500640.CIT292_11100(+)(plastid)
500640.CIT292_07758+
500640.CIT292_07020+not used
500640.CIT292_08564(PF00834)
500640.CIT292_07337+
500640.CIT292_07335(<)
500640.CIT292_07805+
500640.CIT292_09364(PF03981)
500640.CIT292_11109+
500640.CIT292_08353+
500640.CIT292_11281+
500640.CIT292_09785+
500640.CIT292_06691(PF13347)
500640.CIT292_11030+
500640.CIT292_10991+not used
500640.CIT292_10990+not used
500640.CIT292_06325(<)not used
500640.CIT292_10536+
500640.CIT292_06217+
500640.CIT292_07733(+)(ER)
500640.CIT292_07319(<)
500640.CIT292_07731(+)(<)
500640.CIT292_07103(+)(mitochondrial)
500640.CIT292_07108(PF00384)
500640.CIT292_10336(+)+
500640.CIT292_08579(PF03981)
500640.CIT292_08573(+)(plastid)
500640.CIT292_07327(>)
500640.CIT292_07818+not used
500640.CIT292_11123+not used
500640.CIT292_06480+
500640.CIT292_08707+
500640.CIT292_07928(+)(plastid)
500640.CIT292_11053+
500640.CIT292_08956(>)
500640.CIT292_09223+not used
500640.CIT292_09557(+)(plastid)
500640.CIT292_09043(PF03738)
500640.CIT292_09044+
500640.CIT292_05924(>)
500640.CIT292_07929+
500640.CIT292_10451(PF01116)
500640.CIT292_10454+
500640.CIT292_10458(PF13347)
500640.CIT292_09310(+)(plastid)
500640.CIT292_10983(PF00577)
500640.CIT292_10528+
500640.CIT292_10520(>)
500640.CIT292_06206(PF00384)
500640.CIT292_10668+
500640.CIT292_08400+
500640.CIT292_08401+
500640.CIT292_07032+
500640.CIT292_08461+not used
500640.CIT292_07523+
500640.CIT292_11283(+)+
500640.CIT292_07791(PF00384)
500640.CIT292_08090(PF14330)
500640.CIT292_07489(PF01116)
500640.CIT292_07313+
500640.CIT292_11040+
500640.CIT292_08433+
500640.CIT292_08279+
500640.CIT292_06853(<)
500640.CIT292_08022+
500640.CIT292_10422(PF01501)
500640.CIT292_10421(PF01501)
500640.CIT292_10420(+)(PF01501)
500640.CIT292_10733(<)
500640.CIT292_06525(>)
500640.CIT292_08595+
500640.CIT292_06300(+)(ER)
500640.CIT292_06305+
500640.CIT292_10255+
500640.CIT292_07124+not used
500640.CIT292_06365+
500640.CIT292_08055+
500640.CIT292_10223+not used
500640.CIT292_08293(<)
500640.CIT292_07497+
500640.CIT292_07308+
500640.CIT292_11147(+)(mitochondrial)
500640.CIT292_08557(PF00834)
500640.CIT292_08683+
500640.CIT292_09332(+)(mitochondrial)
500640.CIT292_09337+
500640.CIT292_08422+not used
500640.CIT292_10623+
500640.CIT292_09114+
500640.CIT292_10514+
500640.CIT292_11171+
500640.CIT292_06794+
500640.CIT292_10940(PF03738)
500640.CIT292_10549(>)
500640.CIT292_10545(+)ER
500640.CIT292_10890(PF03738)
500640.CIT292_09884+
500640.CIT292_07149+
500640.CIT292_07069(+)(ER)
500640.CIT292_09905+
500640.CIT292_09409+
500640.CIT292_06203(+)
500640.CIT292_07664(+)
500640.CIT292_08525(+)
500640.CIT292_07204(+)
500640.CIT292_07203(+)
500640.CIT292_07201(+)
500640.CIT292_09695(+)not used
500640.CIT292_09429(+)
500640.CIT292_09215(+)
500640.CIT292_08856(+)
500640.CIT292_09078(+)
500640.CIT292_09075(+)
500640.CIT292_06876(+)
500640.CIT292_08629(+)
500640.CIT292_06814(+)
500640.CIT292_05913(+)
500640.CIT292_08273(+)
500640.CIT292_06257(+)
500640.CIT292_06078(+)
500640.CIT292_10470(+)
500640.CIT292_10471(+)
500640.CIT292_11154(+)not used
500640.CIT292_10476(+)
500640.CIT292_07688(+)
500640.CIT292_07517(+)not used
500640.CIT292_07478(+)
500640.CIT292_06400(+)
500640.CIT292_09456(+)not used
500640.CIT292_07693(+)
500640.CIT292_08621(+)
500640.CIT292_07022(+)not used
500640.CIT292_09663(+)
500640.CIT292_08447(+)
500640.CIT292_09266(+)
500640.CIT292_08997(+)
500640.CIT292_08994(+)
500640.CIT292_09460(+)
500640.CIT292_09464(+)
500640.CIT292_06582(+)
500640.CIT292_05908(+)
500640.CIT292_10960(+)
500640.CIT292_10964(+)
500640.CIT292_10568(+)
500640.CIT292_06064(+)
500640.CIT292_06112(+)
500640.CIT292_10553(+)not used
500640.CIT292_07048(+)
500640.CIT292_06296(+)
500640.CIT292_07449(+)
500640.CIT292_09582(+)not used
500640.CIT292_10737(+)
500640.CIT292_09854(+)
500640.CIT292_08503(+)
500640.CIT292_08507(+)
500640.CIT292_07228(+)
500640.CIT292_09877(+)
500640.CIT292_09010(+)
500640.CIT292_06271(+)not used
500640.CIT292_07096(+)
500640.CIT292_06295(+)not used
500640.CIT292_09839(+)not used
500640.CIT292_06298(+)not used
500640.CIT292_08975(+)
500640.CIT292_06727(+)
500640.CIT292_10493(+)not used
500640.CIT292_07187(+)
500640.CIT292_09242(+)
500640.CIT292_08861(+)
500640.CIT292_08864(+)not used
500640.CIT292_10297(+)
500640.CIT292_10290(+)
500640.CIT292_10299(+)
500640.CIT292_09022(+)
500640.CIT292_10760(+)
500640.CIT292_08559(+)
500640.CIT292_05967(+)
500640.CIT292_05963(+)
500640.CIT292_10901(+)
500640.CIT292_10903(+)
500640.CIT292_10613(+)
500640.CIT292_07871(+)
500640.CIT292_08036+
500640.CIT292_10570(+)
500640.CIT292_09624(+)not used
500640.CIT292_08324(+)
500640.CIT292_09232(+)not used
500640.CIT292_11251(+)
500640.CIT292_09233(+)not used
500640.CIT292_07089(+)
500640.CIT292_11199(+)
500640.CIT292_11193(+)
500640.CIT292_08815(+)
500640.CIT292_09657(+)
500640.CIT292_08490(+)
500640.CIT292_08496(+)
500640.CIT292_09037(+)
500640.CIT292_09034(+)
500640.CIT292_10025(+)not used
500640.CIT292_05954(+)
500640.CIT292_05956(+)
500640.CIT292_11159(+)not used
500640.CIT292_06931(+)
500640.CIT292_10583(+)
500640.CIT292_07437(+)
500640.CIT292_08064(+)
500640.CIT292_07726(+)
500640.CIT292_11036(+)
500640.CIT292_08242(+)
500640.CIT292_08392(+)
500640.CIT292_07898(+)
500640.CIT292_10105(+)
500640.CIT292_09645(+)
500640.CIT292_08482(+)
500640.CIT292_06844(+)
500640.CIT292_09756(+)
500640.CIT292_07245(+)
500640.CIT292_10749(+)
500640.CIT292_08608(+)
500640.CIT292_06932(+)
500640.CIT292_06441(+)
500640.CIT292_08028(+)
500640.CIT292_08413(+)
500640.CIT292_09143(+)not used
500640.CIT292_07409(+)
500640.CIT292_07159(+)not used
500640.CIT292_08565(+)
500640.CIT292_06784(+)
500640.CIT292_06503(+)
500640.CIT292_08723(+)not used
500640.CIT292_08230(+)
500640.CIT292_10004(+)
500640.CIT292_07770(+)
500640.CIT292_10791(+)
500640.CIT292_06435(+)
500640.CIT292_08316(+)
500640.CIT292_10481(+)not used
500640.CIT292_08317(+)not used
500640.CIT292_10867(+)
500640.CIT292_10864(+)
500640.CIT292_06543(+)
500640.CIT292_08628(+)
500640.CIT292_08587(+)not used
500640.CIT292_08937(+)
500640.CIT292_07120(+)
500640.CIT292_06697(+)
500640.CIT292_11234(+)not used
500640.CIT292_08005(+)
500640.CIT292_08008(+)
500640.CIT292_07360(+)
500640.CIT292_11304(+)
500640.CIT292_08645(+)
500640.CIT292_10123(+)
500640.CIT292_09510(+)
500640.CIT292_08737(+)
500640.CIT292_09199(+)
500640.CIT292_09191(+)
500640.CIT292_09991(+)
500640.CIT292_09175(+)
500640.CIT292_10788(+)
500640.CIT292_10781(+)
500640.CIT292_10307(+)
500640.CIT292_10225(+)
500640.CIT292_09619(+)
500640.CIT292_06395(+)
500640.CIT292_06372(+)not used
500640.CIT292_06373(+)
500640.CIT292_06375(+)not used
500640.CIT292_06376(+)
500640.CIT292_09580(+)
500640.CIT292_07942(+)
500640.CIT292_09988(+)
500640.CIT292_09989(+)
500640.CIT292_11224(+)
500640.CIT292_08032(+)
500640.CIT292_11009(+)not used
500640.CIT292_07351(+)
500640.CIT292_07594(+)
500640.CIT292_08693(+)
500640.CIT292_08698(+)
500640.CIT292_07829(+)
500640.CIT292_09615(+)
500640.CIT292_07789(+)
500640.CIT292_09189(+)
500640.CIT292_09163(+)
500640.CIT292_09164(+)not used
500640.CIT292_08086(+)
500640.CIT292_09508(+)
500640.CIT292_07714(+)
500640.CIT292_06805(+)
500640.CIT292_10201(+)
500640.CIT292_10626(+)
500640.CIT292_06989(+)not used
500640.CIT292_10672(+)
500640.CIT292_06049(+)not used
500640.CIT292_10469(+)
500640.CIT292_10316(+)
500640.CIT292_06322(+)
500640.CIT292_07763(+)
500640.CIT292_08128(+)
500640.CIT292_07904(+)
500640.CIT292_07618(+)
500640.CIT292_08112(+)
500640.CIT292_09138(+)
500640.CIT292_08680(+)
500640.CIT292_08681(+)
500640.CIT292_10072(+)
500640.CIT292_09154(+)
500640.CIT292_09403(+)not used
500640.CIT292_09575(+)
500640.CIT292_09087(+)
500640.CIT292_07566(+)not used
500640.CIT292_11157(+)
500640.CIT292_06972(+)
500640.CIT292_10697(+)
500640.CIT292_10210(+)not used
500640.CIT292_06572(+)
500640.CIT292_08347(+)
500640.CIT292_06578(+)
500640.CIT292_08210(+)
500640.CIT292_06563(+)
500640.CIT292_09837(+)not used
500640.CIT292_06199(+)not used
500640.CIT292_06586(+)
500640.CIT292_08219(+)
500640.CIT292_08138(+)
500640.CIT292_07420(+)
500640.CIT292_07937(+)
500640.CIT292_10587(+)
500640.CIT292_11031(+)
500640.CIT292_06690(+)not used
500640.CIT292_10997(+)
500640.CIT292_07739(+)
500640.CIT292_10530(+)
500640.CIT292_07736(+)
500640.CIT292_07318(+)not used
500640.CIT292_07874(+)
500640.CIT292_08176(+)
500640.CIT292_09292(+)
500640.CIT292_06948(+)
500640.CIT292_06652(+)not used
500640.CIT292_10841(+)
500640.CIT292_08576(+)not used
500640.CIT292_08256(+)
500640.CIT292_07956(+)
500640.CIT292_06565(+)
500640.CIT292_07926(+)
500640.CIT292_06431(+)
500640.CIT292_11213(+)
500640.CIT292_06422(+)
500640.CIT292_06207(+)
500640.CIT292_06224(+)
500640.CIT292_09651(+)
500640.CIT292_07336(+)
500640.CIT292_08099(+)
500640.CIT292_07310(+)
500640.CIT292_09943(+)
500640.CIT292_08436(+)
500640.CIT292_10291(+)
500640.CIT292_06288(+)
500640.CIT292_10734(+)
500640.CIT292_10951(+)
500640.CIT292_06239(+)
500640.CIT292_10880(+)
500640.CIT292_10756(+)
500640.CIT292_09852(+)
500640.CIT292_06162(+)
500640.CIT292_09853(+)
500640.CIT292_07275(+)
500640.CIT292_10981(+)not used
500640.CIT292_09330(+)
500640.CIT292_10403(+)
500640.CIT292_07832(+)
500640.CIT292_10430(+)
500640.CIT292_06828(+)
500640.CIT292_06829(+)
500640.CIT292_05923(+)
500640.CIT292_06004(+)not used
500640.CIT292_09608(+)
500640.CIT292_07065(+)
500640.CIT292_08309(+)
500640.CIT292_08750(+)
500640.CIT292_10938(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 1.5 (15/10 KEGG proteins)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 2.625 (21/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================