Effective results for Corynebacterium urealyticum DSM 7109 (eggnog40)

Summary

Number of putative secreted proteins: 48
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 48 proteins (31 high, 17 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
504474.cur_1823				(PF13276)	mitochondrial
504474.cur_1821				(PF13276)	(mitochondrial); mitochondrial
504474.cur_1394				(PF13276)	(mitochondrial)
504474.cur_0043				(PF11070)	ER
504474.cur_1919				PF00872
504474.cur_1918				PF00872
504474.cur_1917				PF00872
504474.cur_1708				PF00872
504474.cur_0273				PF00872
504474.cur_1458				PF00872
504474.cur_1459				(PF13276)
504474.cur_1457				PF00872
504474.cur_1454				(PF13276)
504474.cur_1599				(PF13276)
504474.cur_1597				PF00872
504474.cur_0514				(PF13276)
504474.cur_0513				PF00872
504474.cur_1615				PF00872
504474.cur_1926				PF00872
504474.cur_1927				PF00872
504474.cur_1924				PF00872
504474.cur_1920				PF00872
504474.cur_1820				PF00872
504474.cur_0682				(PF13276)
504474.cur_0338				PF00872
504474.cur_1311				PF00872
504474.cur_1492				(PF13276)
504474.cur_1493				PF00872
504474.cur_1491				PF00872
504474.cur_1543				PF00872
504474.cur_0221				PF08213	not used
504474.cur_0036				PF00872
504474.cur_0034				PF00872
504474.cur_0760				(PF13276)
504474.cur_1875				(PF13276)
504474.cur_1876				PF00872
504474.cur_0026				PF00872
504474.cur_1770				(PF00755)
504474.cur_0628				PF00872
504474.cur_0802				(PF01746)
504474.cur_0803				(PF01746)
504474.cur_0920				PF00872
504474.cur_0284				(PF13276)
504474.cur_0285				PF00872
504474.cur_1648				PF00872
504474.cur_1654				(PF13276)
504474.cur_1655				PF00872
504474.cur_1650				PF00872

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================