Effective results for Oceanimonas sp. GK1 (eggnog40)

Summary

Number of putative secreted proteins: 38
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 38 proteins (0 high, 38 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
511062.GU3_11660				(PF03553)	ER
511062.GU3_13890				(PF03553)	ER
511062.GU3_00175				(PF03553)	ER
511062.GU3_08105				(PF03553)	ER
511062.GU3_02290				(PF05706)	(ER)
511062.GU3_07815				(PF02028)	ER
511062.GU3_06830				(PF02028)	ER
511062.GU3_06825				(PF02028)	ER
511062.GU3_07980				(PF02028)	ER
511062.GU3_07850				(PF02028)	ER
511062.GU3_01935				(PF02028)	ER
511062.GU3_00210				(PF03553)	(ER)
511062.GU3_10920				(PF03553)	ER
511062.GU3_05245				(PF01527)
511062.GU3_05330				(PF01527)
511062.GU3_04225				(PF01527)
511062.GU3_11615				(PF01527)
511062.GU3_01155				(PF02028)
511062.GU3_06895				(PF02028)
511062.GU3_07935				(PF13430)
511062.GU3_07920				(PF13430)
511062.GU3_14530				(PF03553)
511062.GU3_13895				(PF13875)
511062.GU3_05505				(PF01527)
511062.GU3_12025				(PF01527)
511062.GU3_00110				(PF03553)
511062.GU3_15570				(PF01527)
511062.GU3_13660				(PF01527)
511062.GU3_03245				(PF01527)
511062.GU3_12655				(PF01527)
511062.GU3_03720				(PF01527)
511062.GU3_09465				(PF01527)
511062.GU3_13360				(PF09811)
511062.GU3_08255				(PF01527)
511062.GU3_11540				(PF01527)
511062.GU3_05910				(PF01527)
511062.GU3_11885				(PF01527)
511062.GU3_02585				(PF03553)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================