Metamenu

Effective results for Escherichia coli str. K-12 substr. MG1655 (eggnog40)

Summary

Number of putative secreted proteins: 158
- Predicted by T4SEpre: 86
- Predicted by EffectiveELD: 23 eukaryotic-like domains, contained in 80 proteins (9 high, 71 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV), (Type VI)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
511145.b0552(PF05598) (PF01609)mitochondrial
511145.b2982(PF05598) (PF01609)mitochondrial
511145.b3218(PF05598) (PF01609)mitochondrial
511145.b2192(PF05598) (PF01609)mitochondrial
511145.b0259(PF05598) (PF01609)mitochondrial
511145.b0656(PF05598) (PF01609)mitochondrial
511145.b1331(PF05598) (PF01609)mitochondrial
511145.b2030(PF05598) (PF01609)mitochondrial
511145.b3505(PF05598) (PF01609)mitochondrial
511145.b3570+ER
511145.b4354+ER
511145.b3080(PF01204)ER
511145.b3896+ER
511145.b3951(PF01228)(mitochondrial)
511145.b2175+(ER); ER
511145.b1172(PF13436)ER
511145.b3937(PF05708)ER
511145.b1994(PF05598) (PF01609)mitochondrial
511145.b1990+ER
511145.b1197(PF01204)ER
511145.b2555+(ER)
511145.b3331+ER
511145.b0489+ER
511145.b3709(PF03222)(ER)
511145.b1737+ER; (ER)
511145.b1087+(mitochondrial)
511145.b1452+(mitochondrial)
511145.b1421+ER
511145.b1470+ER; (ER)
511145.b2494+ER
511145.b3035+ER
511145.b2558+ER
511145.b3440+mitochondrial; (mitochondrial)
511145.b1907(PF03222)ER; (ER)
511145.b3838+ER
511145.b3448+ER
511145.b2233(PF02415)ER; (ER)
511145.b1604+ER
511145.b3193+ER
511145.b4175+ER
511145.b3175+ER
511145.b0980(PF00328)ER
511145.b1329+ER
511145.b3161(PF03222)(ER); ER
511145.b2965(PF01276) (PF03711)(plastid)
511145.b2506+ER
511145.b0193(PF05708)ER
511145.b1002(PF00328)ER
511145.b0740+ER
511145.b0541(PF13276)(mitochondrial)
511145.b3569+(mitochondrial)
511145.b1370(PF05598) (PF01609)
511145.b0372(PF13276)(mitochondrial)
511145.b2089(PF13276)(mitochondrial)
511145.b2845(PF03222)(ER)
511145.b4117(PF01276) (PF03711)
511145.b0299(PF13276)(mitochondrial)
511145.b1889+(mitochondrial)
511145.b4131(PF01276) (PF03711)
511145.b2383(PF05524)(mitochondrial)
511145.b2669+(mitochondrial)
511145.b3297+(mitochondrial)
511145.b1026(PF13276)(mitochondrial)
511145.b0186(PF01276) (PF03711)
511145.b0693(PF01276) (PF03711)
511145.b2599+
511145.b1831+
511145.b2761+
511145.b3567+
511145.b2416(PF05524)
511145.b0361(PF13276)
511145.b0823(PF01228)
511145.b1570+
511145.b2579(PF01228)
511145.b3558(PF13276)
511145.b0037+
511145.b3045(PF13276)
511145.b3947(PF05524)
511145.b0949+
511145.b4301(PF00834)
511145.b0021PF03400
511145.b0797+
511145.b4273(PF13276)
511145.b4475(PF05189)
511145.b1996(PF13276)
511145.b1355PF14555not used
511145.b1198(PF05524)
511145.b1659+
511145.b1460(PF01609)
511145.b3333+
511145.b3116(PF03222)
511145.b3114(PF01228)
511145.b3445PF03400
511145.b0016(PF01609)
511145.b3068+
511145.b0903(PF01228)
511145.b0163+
511145.b2891+
511145.b0582(PF01609)
511145.b1987+
511145.b1188+
511145.b3910+
511145.b2631+
511145.b2988(PF03738)
511145.b3128+
511145.b2851(PF07720)
511145.b1402(PF13276)
511145.b3866+
511145.b4069+
511145.b2843+
511145.b4287+
511145.b0109+
511145.b4278(PF01609)
511145.b3484(PF01609)
511145.b1250+
511145.b0288+
511145.b1088+
511145.b0200+
511145.b2608+
511145.b2269(PF02902)
511145.b3247+
511145.b3021+
511145.b2860(PF13276)
511145.b3733+
511145.b1893PF03400
511145.b0706(PF01609)
511145.b3387+
511145.b3386(PF00834)
511145.b3038(PF03738)
511145.b1862(PF05708)
511145.b3812+
511145.b2217+
511145.b1289+
511145.b3625(PF06176)
511145.b2394(PF01609)
511145.b3539(PF03222)
511145.b2805+
511145.b4085(PF00834)
511145.b0274PF03400
511145.b0477+
511145.b0506+
511145.b4309+
511145.b0264PF03400
511145.b4185+
511145.b4186(PF03738)
511145.b2829(PF05524)
511145.b3519(PF01204)
511145.b4174+
511145.b0988PF03400
511145.b4192+
511145.b1107+
511145.b0323+
511145.b0526+
511145.b3618PF09612
511145.b3183+
511145.b4526PF04181not used
511145.b1001+
511145.b2022+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.375 (3/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================