Effective results for Denitrovibrio acetiphilus DSM 12809 (eggnog40)
Summary
Number of putative secreted proteins: 110
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 110 proteins (1 high, 109 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 522772.Dacet_2175 | (PF00384) (PF01568) | mitochondrial | |||
| 522772.Dacet_2616 | (PF00384) (PF01568) | (mitochondrial); mitochondrial | |||
| 522772.Dacet_1649 | (PF00384) (PF01568) | (mitochondrial) | |||
| 522772.Dacet_1655 | (PF00384) (PF01568) | mitochondrial; (mitochondrial) | |||
| 522772.Dacet_2644 | (PF13276) (PF00665) | mitochondrial | |||
| 522772.Dacet_1793 | (PF00384) (PF01568) | mitochondrial; (mitochondrial) | |||
| 522772.Dacet_1678 | (PF00384) (PF01568) | mitochondrial | |||
| 522772.Dacet_2103 | (PF00384) (PF01568) | (mitochondrial) | |||
| 522772.Dacet_0086 | (PF00384) (PF01568) | mitochondrial; (mitochondrial) | |||
| 522772.Dacet_2786 | (PF13276) (PF00665) | mitochondrial | |||
| 522772.Dacet_0197 | (PF00384) (PF01568) | (mitochondrial) | |||
| 522772.Dacet_0193 | (PF00384) (PF01568) | (mitochondrial) | |||
| 522772.Dacet_0205 | (PF00384) (PF01568) | (mitochondrial) | |||
| 522772.Dacet_0201 | (PF00384) (PF01568) | (mitochondrial) | |||
| 522772.Dacet_0668 | (PF13276) (PF00665) | mitochondrial | |||
| 522772.Dacet_0768 | (PF00665) | ER; (ER) | |||
| 522772.Dacet_0016 | (PF00384) (PF01568) (PF13237) | ||||
| 522772.Dacet_1085 | (PF00665) | ER; (ER) | |||
| 522772.Dacet_2121 | (PF00384) (PF01568) | (mitochondrial) | |||
| 522772.Dacet_0713 | (PF00665) | ER; (ER) | |||
| 522772.Dacet_0246 | (PF00665) | ER; (ER) | |||
| 522772.Dacet_1617 | PF01591 | (mitochondrial) | |||
| 522772.Dacet_0689 | (PF13276) (PF00665) (PF01527) | ||||
| 522772.Dacet_2575 | (PF00384) (PF01568) | ||||
| 522772.Dacet_2173 | (PF00384) (PF01568) | ||||
| 522772.Dacet_1128 | (PF13276) (PF00665) | ||||
| 522772.Dacet_1373 | (PF13276) (PF01527) | ||||
| 522772.Dacet_0760 | (PF00665) | (mitochondrial) | |||
| 522772.Dacet_0926 | (PF00384) (PF01568) | ||||
| 522772.Dacet_2070 | (PF00384) (PF01568) | ||||
| 522772.Dacet_2675 | (PF13276) (PF00665) | ||||
| 522772.Dacet_2674 | (PF13276) (PF00665) | ||||
| 522772.Dacet_2673 | (PF01527) | (mitochondrial) | |||
| 522772.Dacet_2493 | (PF00384) (PF13237) | ||||
| 522772.Dacet_1479 | (PF01527) | (mitochondrial) | |||
| 522772.Dacet_1078 | (PF00665) | (mitochondrial) | |||
| 522772.Dacet_2640 | (PF00665) | (mitochondrial) | |||
| 522772.Dacet_0270 | (PF00665) | (mitochondrial) | |||
| 522772.Dacet_0654 | (PF13276) (PF00665) | ||||
| 522772.Dacet_2699 | (PF13276) (PF00665) | ||||
| 522772.Dacet_0642 | (PF00665) | (mitochondrial) | |||
| 522772.Dacet_0648 | (PF13276) (PF01527) | ||||
| 522772.Dacet_1597 | (PF03266) | (ER) | |||
| 522772.Dacet_0677 | (PF00384) (PF01568) | ||||
| 522772.Dacet_2568 | (PF13276) (PF01527) | ||||
| 522772.Dacet_2764 | (PF00384) (PF01568) | ||||
| 522772.Dacet_0993 | (PF13276) (PF01527) | ||||
| 522772.Dacet_1485 | (PF13276) (PF00665) | ||||
| 522772.Dacet_1484 | (PF01527) | (mitochondrial) | |||
| 522772.Dacet_1480 | (PF13276) (PF00665) | ||||
| 522772.Dacet_0548 | (PF00872) | ||||
| 522772.Dacet_1129 | (PF01527) | ||||
| 522772.Dacet_1494 | (PF00872) | ||||
| 522772.Dacet_0714 | (PF01695) | ||||
| 522772.Dacet_0715 | (PF01695) | ||||
| 522772.Dacet_0767 | (PF01695) | ||||
| 522772.Dacet_0766 | (PF00872) | ||||
| 522772.Dacet_2639 | (PF01695) | ||||
| 522772.Dacet_1999 | (PF13237) | ||||
| 522772.Dacet_0759 | (PF01695) | ||||
| 522772.Dacet_0754 | (PF00872) | ||||
| 522772.Dacet_0724 | (PF00872) | ||||
| 522772.Dacet_2676 | (PF01527) | ||||
| 522772.Dacet_1642 | (PF01695) | ||||
| 522772.Dacet_1081 | (PF01695) | ||||
| 522772.Dacet_1080 | (PF00665) | ||||
| 522772.Dacet_1087 | (PF01527) | ||||
| 522772.Dacet_1086 | (PF01695) | ||||
| 522772.Dacet_2800 | (PF00872) | ||||
| 522772.Dacet_0635 | (PF00872) | ||||
| 522772.Dacet_0252 | (PF00665) | ||||
| 522772.Dacet_0709 | (PF00665) | ||||
| 522772.Dacet_1470 | (PF01695) | ||||
| 522772.Dacet_1471 | (PF00665) | ||||
| 522772.Dacet_1077 | (PF01695) | ||||
| 522772.Dacet_0710 | (PF01695) | ||||
| 522772.Dacet_0247 | (PF01695) | ||||
| 522772.Dacet_0624 | (PF01527) | ||||
| 522772.Dacet_1867 | (PF01527) | not used | |||
| 522772.Dacet_1866 | (PF00872) | ||||
| 522772.Dacet_1915 | (PF13237) | ||||
| 522772.Dacet_2645 | (PF01527) | ||||
| 522772.Dacet_2820 | (PF00665) | ||||
| 522772.Dacet_2821 | (PF01695) | ||||
| 522772.Dacet_2822 | (PF00872) | ||||
| 522772.Dacet_1792 | (PF00872) | ||||
| 522772.Dacet_0271 | (PF01695) | ||||
| 522772.Dacet_0655 | (PF00872) | ||||
| 522772.Dacet_0653 | (PF01527) | ||||
| 522772.Dacet_1459 | (PF01527) | ||||
| 522772.Dacet_2033 | (PF12038) | ||||
| 522772.Dacet_2583 | (PF00665) | ||||
| 522772.Dacet_2582 | (PF01695) | ||||
| 522772.Dacet_2698 | (PF01527) | ||||
| 522772.Dacet_0266 | (PF00665) | ||||
| 522772.Dacet_0267 | (PF01695) | ||||
| 522772.Dacet_0643 | (PF01695) | ||||
| 522772.Dacet_1594 | (PF00872) | ||||
| 522772.Dacet_0673 | (PF00665) | ||||
| 522772.Dacet_0674 | (PF01695) | ||||
| 522772.Dacet_1618 | (PF00872) | ||||
| 522772.Dacet_2785 | (PF01527) | ||||
| 522772.Dacet_2944 | (PF00862) | ||||
| 522772.Dacet_0669 | (PF01527) | ||||
| 522772.Dacet_0667 | (PF00872) | ||||
| 522772.Dacet_0663 | (PF00872) | ||||
| 522772.Dacet_0687 | (PF13237) | ||||
| 522772.Dacet_0688 | (PF00872) | ||||
| 522772.Dacet_1482 | (PF01527) | ||||
| 522772.Dacet_1486 | (PF00872) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
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