Effective results for Staphylococcus caprae M23864:W1 (eggnog40)

Summary

Number of putative secreted proteins: 31
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 31 proteins (11 high, 20 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
525378.HMPREF0793_0474				(PF11070)	ER
525378.HMPREF0793_1432				PF05257	ER; (ER)
525378.HMPREF0793_0630				PF05257	(mitochondrial)
525378.HMPREF0793_0931				(PF05345)	(mitochondrial)
525378.HMPREF0793_1339				PF05257	(mitochondrial)
525378.HMPREF0793_0458				(PF06039)	(ER)
525378.HMPREF0793_0388				PF05257	(ER)
525378.HMPREF0793_1896				PF05257	(mitochondrial)
525378.HMPREF0793_1649				(PF06039)
525378.HMPREF0793_0729				PF05257
525378.HMPREF0793_2344				(PF09419)
525378.HMPREF0793_0711				(PF06039)
525378.HMPREF0793_0887				(PF06039)
525378.HMPREF0793_0525				PF08771
525378.HMPREF0793_2563				(PF05345)
525378.HMPREF0793_2038				(PF01715)
525378.HMPREF0793_2037				(PF01715)
525378.HMPREF0793_0392				PF05257
525378.HMPREF0793_2559				(PF05345)	not used
525378.HMPREF0793_2556				(PF05345)
525378.HMPREF0793_0956				(PF03059)
525378.HMPREF0793_2042				(PF06838)
525378.HMPREF0793_2043				(PF06838)	not used
525378.HMPREF0793_1149				PF05257
525378.HMPREF0793_1413				(PF05495)
525378.HMPREF0793_1168				(PF05345)	not used
525378.HMPREF0793_1169				(PF05345)	not used
525378.HMPREF0793_1508				PF05257
525378.HMPREF0793_0822				PF05257
525378.HMPREF0793_0064				(PF03630)
525378.HMPREF0793_0930				(PF05345)	not used

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================