Effective results for Streptococcus equinus ATCC 9812 (eggnog40)

Summary

Number of putative secreted proteins: 29
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 29 proteins (1 high, 28 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
525379.HMPREF0819_1221				(PF05257)	(mitochondrial)
525379.HMPREF0819_0083				(PF01610)	(ER)
525379.HMPREF0819_0308				PF02916	ER
525379.HMPREF0819_1638				(PF01610)	(ER)
525379.HMPREF0819_0822				(PF03714)	(mitochondrial)
525379.HMPREF0819_0526				(PF05257)	ER
525379.HMPREF0819_0946				(PF06100)	(mitochondrial)
525379.HMPREF0819_0158				(PF06280)	(mitochondrial)
525379.HMPREF0819_0723				(PF05257)
525379.HMPREF0819_1789				(PF01610)	not used
525379.HMPREF0819_0184				(PF03714)
525379.HMPREF0819_0157				(PF06280)
525379.HMPREF0819_0326				(PF01610)	not used
525379.HMPREF0819_1119				(PF10544)
525379.HMPREF0819_0643				(PF01610)	not used
525379.HMPREF0819_0906				(PF01610)	not used
525379.HMPREF0819_1768				(PF05257)	not used
525379.HMPREF0819_1286				(PF05495)
525379.HMPREF0819_0487				(PF10544)
525379.HMPREF0819_0750				(PF00343)
525379.HMPREF0819_0947				(PF06100)
525379.HMPREF0819_0945				(PF06100)
525379.HMPREF0819_0443				(PF10544)
525379.HMPREF0819_0525				(PF01610)	not used
525379.HMPREF0819_0608				(PF01610)
525379.HMPREF0819_0190				(PF00343)
525379.HMPREF0819_0191				(PF00343)
525379.HMPREF0819_0192				(PF00343)
525379.HMPREF0819_0193				(PF00343)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================