Effective results for Sulfurospirillum deleyianum DSM 6946 (eggnog40)

Summary

Number of putative secreted proteins: 31
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 31 proteins (1 high, 30 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
525898.Sdel_0117				(PF00032) (PF00033)	ER
525898.Sdel_1779				(PF01531)	(mitochondrial)
525898.Sdel_0480				(PF05140)	ER
525898.Sdel_1787				(PF01531)	(mitochondrial)
525898.Sdel_0699				(PF05140)	ER
525898.Sdel_0982				(PF08495) (PF10442)	(mitochondrial)
525898.Sdel_0951				(PF11074)	(mitochondrial)
525898.Sdel_0708				(PF05140)	ER
525898.Sdel_1767				(PF02516)	ER
525898.Sdel_1775				PF03414	(ER)
525898.Sdel_0741				(PF00032) (PF00033)
525898.Sdel_0268				(PF08495) (PF10442)
525898.Sdel_1832				(PF00032) (PF00033)
525898.Sdel_1476				(PF08495) (PF10442)
525898.Sdel_1907				(PF11523)	(mitochondrial)
525898.Sdel_0895				(PF08495) (PF10442)
525898.Sdel_1416				(PF02689)
525898.Sdel_1774				(PF01531)
525898.Sdel_0933				(PF01695)
525898.Sdel_1998				(PF01695)
525898.Sdel_1215				(PF01823)
525898.Sdel_0336				(PF14336)
525898.Sdel_0923				(PF01695)
525898.Sdel_1004				(PF01695)
525898.Sdel_1007				(PF01695)
525898.Sdel_1255				(PF01695)
525898.Sdel_1257				(PF01695)
525898.Sdel_1245				(PF01695)
525898.Sdel_0733				(PF02943)
525898.Sdel_0943				(PF01695)
525898.Sdel_0778				(PF01695)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================