Metamenu

Effective results for Sulfitobacter sp. EE-36 (eggnog40)

Summary

Number of putative secreted proteins: 19
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 19 proteins (0 high, 19 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
52598.EE36_11414(PF13704) (PF02475)(ER)
52598.EE36_05963(PF01755)(mitochondrial)
52598.EE36_06288(PF11977)ER
52598.EE36_05443(PF05830)(mitochondrial)
52598.EE36_07093(PF09731)(ER)
52598.EE36_06788(PF13704)mitochondrial; (plastid)
52598.EE36_06783(PF13704)mitochondrial
52598.EE36_06778(PF02485)plastid
52598.EE36_02188(PF01755)
52598.EE36_15007(PF14532)
52598.EE36_02198(PF01755)
52598.EE36_03953(PF09458)
52598.EE36_16442(PF13704)
52598.EE36_08198(PF02485)
52598.EE36_10340(PF14532)
52598.EE36_01755(PF13704)
52598.EE36_11404(PF13704)
52598.EE36_13723(PF14532)
52598.EE36_01210(PF00070)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================