Metamenu

Effective results for Meiothermus silvanus DSM 9946 (eggnog40)

Summary

Number of putative secreted proteins: 116
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 116 proteins (61 high, 55 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
526227.Mesil_2085(PF10162)ER
526227.Mesil_2668(PF01609)(mitochondrial)
526227.Mesil_1109(PF01609)(mitochondrial)
526227.Mesil_0213(PF00112)ER
526227.Mesil_0206(PF00112)ER
526227.Mesil_3173(PF01609)(mitochondrial)
526227.Mesil_1144(PF01609)(mitochondrial)
526227.Mesil_0087(PF01609)(ER)
526227.Mesil_3091PF13683 PF13565
526227.Mesil_0010(PF00872)(mitochondrial)
526227.Mesil_0721PF13683 PF13565
526227.Mesil_0729PF13683 PF13565
526227.Mesil_1702PF13683 PF13565
526227.Mesil_0876PF13683 PF13565
526227.Mesil_0873(PF00872)(mitochondrial)
526227.Mesil_2732PF13683 PF13565
526227.Mesil_2429PF13683 PF13565
526227.Mesil_3061(PF00872)(mitochondrial)
526227.Mesil_0006PF13683 PF13565
526227.Mesil_1733(PF00872)(mitochondrial)
526227.Mesil_1352PF13683 PF13565
526227.Mesil_0748PF13683 PF13565
526227.Mesil_2677PF13683 PF13565
526227.Mesil_2719PF13683 PF13565
526227.Mesil_2714PF13683 PF13565
526227.Mesil_3104PF13683 PF13565
526227.Mesil_3105(PF00872)(mitochondrial)
526227.Mesil_0118PF13683 PF13565
526227.Mesil_2064PF13683 PF13565
526227.Mesil_1990PF13683 PF13565
526227.Mesil_1978PF13683 PF13565
526227.Mesil_1564PF13683 PF13565
526227.Mesil_1366PF13683 PF13565
526227.Mesil_2691PF13683 PF13565
526227.Mesil_2869PF13683 PF13565
526227.Mesil_0171PF13683 PF13565
526227.Mesil_1178PF13683 PF13565
526227.Mesil_1779PF13683 PF13565
526227.Mesil_2198PF13683 PF13565
526227.Mesil_0779PF13683 PF13565
526227.Mesil_1303(PF00872)(mitochondrial)
526227.Mesil_1541PF13683 PF13565
526227.Mesil_1238PF13683 PF13565
526227.Mesil_2449PF13683 PF13565
526227.Mesil_1890(PF00872)(mitochondrial)
526227.Mesil_0375PF13683 PF13565
526227.Mesil_1159PF13683 PF13565
526227.Mesil_1152PF13683 PF13565
526227.Mesil_3016PF13683 PF13565
526227.Mesil_2491PF13683 PF13565
526227.Mesil_0527PF13683 PF13565
526227.Mesil_2305PF13683 PF13565
526227.Mesil_2302(PF00872)(mitochondrial)
526227.Mesil_2013(PF00872)(mitochondrial)
526227.Mesil_3167PF13683 PF13565
526227.Mesil_0896PF13683 PF13565
526227.Mesil_0891PF13683 PF13565
526227.Mesil_2485PF13683 PF13565
526227.Mesil_1853PF13683 PF13565
526227.Mesil_0088PF13683 PF13565
526227.Mesil_0402PF03465(mitochondrial)
526227.Mesil_1261(PF00872)(mitochondrial)
526227.Mesil_1469(PF00872)(mitochondrial)
526227.Mesil_2762PF13683 PF13565
526227.Mesil_2964PF13683 PF13565
526227.Mesil_0321PF13683 PF13565
526227.Mesil_0613(PF03630)(ER)
526227.Mesil_1694(PF00872)(mitochondrial)
526227.Mesil_1690PF13683 PF13565
526227.Mesil_3181PF13683 PF13565
526227.Mesil_2572(PF00872)(mitochondrial)
526227.Mesil_0455PF13683 PF13565
526227.Mesil_1071PF13683 PF13565
526227.Mesil_1250(PF00872)(mitochondrial)
526227.Mesil_1497PF13683 PF13565
526227.Mesil_3080PF13683 PF13565
526227.Mesil_1815PF13683 PF13565
526227.Mesil_1394PF13683 PF13565
526227.Mesil_0711PF13683 PF13565
526227.Mesil_1718(PF00872)(mitochondrial)
526227.Mesil_0722PF08152
526227.Mesil_1632(PF01609)
526227.Mesil_0121(PF01609)
526227.Mesil_0641(PF01609)
526227.Mesil_1605(PF01609)
526227.Mesil_2411(PF01609)
526227.Mesil_1035(PF01609)
526227.Mesil_1729(PF01609)
526227.Mesil_2669(PF10462)
526227.Mesil_0808(PF01609)
526227.Mesil_0565PF04098
526227.Mesil_0568(PF01609)
526227.Mesil_1741(PF01609)
526227.Mesil_1411(PF02475)
526227.Mesil_1989(PF01609)
526227.Mesil_3025(PF01609)
526227.Mesil_2861(PF14721)
526227.Mesil_1967(PF01609)
526227.Mesil_1081(PF04930)
526227.Mesil_2192(PF01609)
526227.Mesil_1314PF04098
526227.Mesil_1426(PF07250)
526227.Mesil_1203(PF01609)
526227.Mesil_0630(PF01609)
526227.Mesil_0635(PF01609)
526227.Mesil_1450(PF01991)
526227.Mesil_2798(PF01609)
526227.Mesil_2006(PF00025)
526227.Mesil_0186(PF01609)
526227.Mesil_1696(PF01609)
526227.Mesil_2611PF04098
526227.Mesil_1099(PF01609)
526227.Mesil_0989(PF01609)
526227.Mesil_1806PF13565
526227.Mesil_2126(PF01609)
526227.Mesil_2914(PF01609)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================