Effective results for Bacillus cereus Rock4-18 (eggnog40)

Summary

Number of putative secreted proteins: 23
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 23 proteins (2 high, 21 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
526988.bcere0024_1730				(PF14748)	(mitochondrial)
526988.bcere0024_24110				(PF03717)	ER
526988.bcere0024_36380				(PF03717)	ER
526988.bcere0024_32090				(PF04371)	ER
526988.bcere0024_55880				(PF03717)	(ER)
526988.bcere0024_55840				(PF03717)	(ER)
526988.bcere0024_23980				(PF03717)	ER
526988.bcere0024_2100				(PF03851)	(mitochondrial)
526988.bcere0024_55870				(PF03717)	ER
526988.bcere0024_36370				(PF03717)	ER
526988.bcere0024_32270				(PF11070)	ER
526988.bcere0024_50000				(PF03851)	(plastid)
526988.bcere0024_19570				(PF03717)
526988.bcere0024_38540				(PF14748)
526988.bcere0024_19310				PF09295
526988.bcere0024_40420				(PF14748)
526988.bcere0024_28640				(PF14748)
526988.bcere0024_30830				PF09295
526988.bcere0024_57300				(PF04371)
526988.bcere0024_32060				(PF04371)
526988.bcere0024_52590				(PF13151)
526988.bcere0024_39870				(PF03717)
526988.bcere0024_32030				(PF04371)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================