Metamenu

Effective results for Variovorax paradoxus S110 (eggnog40)

Summary

Number of putative secreted proteins: 196
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 30 eukaryotic-like domains, contained in 196 proteins (2 high, 194 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
543728.Vapar_5649(PF08843)mitochondrial
543728.Vapar_2346(PF13091)ER
543728.Vapar_4772(PF13091)ER
543728.Vapar_3408(PF14588)(ER)
543728.Vapar_5010(PF13458)ER
543728.Vapar_0533(PF13599)ER
543728.Vapar_2014(PF13091)ER; (ER)
543728.Vapar_5221(PF13458)ER
543728.Vapar_1230(PF13458)ER
543728.Vapar_3869(PF09084)mitochondrial; (mitochondrial)
543728.Vapar_1581(PF13458)ER
543728.Vapar_3846(PF09084)ER
543728.Vapar_5870(PF13458)ER
543728.Vapar_4795(PF13458)ER
543728.Vapar_0087(PF13458)ER
543728.Vapar_0081(PF07519)(ER)
543728.Vapar_5264(PF13449)ER
543728.Vapar_0142(PF13091)ER
543728.Vapar_1897(PF09084)(mitochondrial)
543728.Vapar_0335(PF13458)(mitochondrial)
543728.Vapar_5515(PF09084)mitochondrial
543728.Vapar_0105(PF09084)mitochondrial; ER
543728.Vapar_1501(PF13458)ER; (mitochondrial)
543728.Vapar_1500(PF13458)ER
543728.Vapar_1506(PF12399)ER
543728.Vapar_1504(PF13458)ER; (ER)
543728.Vapar_2416(PF13458)ER
543728.Vapar_2733(PF13458)ER
543728.Vapar_2334(PF09084)mitochondrial; (mitochondrial)
543728.Vapar_4663(PF01148)(ER)
543728.Vapar_0633(PF12399)(mitochondrial)
543728.Vapar_0631(PF13458)ER
543728.Vapar_2101(PF13458)ER
543728.Vapar_0532(PF13599)(mitochondrial)
543728.Vapar_6340(PF08843)ER; (ER)
543728.Vapar_0188(PF13458)mitochondrial
543728.Vapar_0187(PF00857)(ER)
543728.Vapar_1752(PF07519)ER
543728.Vapar_6053(PF09084)ER
543728.Vapar_0792(PF13458)ER; (ER)
543728.Vapar_3959(PF09084)ER
543728.Vapar_5971(PF13458)ER
543728.Vapar_2967(PF02558)mitochondrial; (mitochondrial)
543728.Vapar_3485(PF13458)ER
543728.Vapar_0931(PF01148)ER
543728.Vapar_0203(PF13599)mitochondrial
543728.Vapar_0463(PF01323)(ER)
543728.Vapar_0467(PF13091)ER
543728.Vapar_5379(PF13458)ER
543728.Vapar_4707(PF01323)(ER); ER
543728.Vapar_4704(PF13458)ER
543728.Vapar_4703(PF13458)ER
543728.Vapar_1861(PF09084)ER
543728.Vapar_4956(PF02558)(ER)
543728.Vapar_0038(PF14588)(ER)
543728.Vapar_2867(PF13599)mitochondrial
543728.Vapar_3874(PF09084)(mitochondrial)
543728.Vapar_0821(PF13458)(mitochondrial)
543728.Vapar_3517(PF13458)mitochondrial; ER
543728.Vapar_4295(PF13458)ER
543728.Vapar_1228(PF12399)(ER)
543728.Vapar_0154(PF09084)ER
543728.Vapar_0564(PF08964)ER
543728.Vapar_0366(PF13458)ER
543728.Vapar_3780(PF13599)mitochondrial
543728.Vapar_5061(PF13449)(ER); ER
543728.Vapar_2228(PF13449)ER
543728.Vapar_2604(PF01148)ER
543728.Vapar_0641(PF13458)ER
543728.Vapar_4935(PF13458)ER
543728.Vapar_0622(PF09084)ER
543728.Vapar_1935(PF02655)(mitochondrial)
543728.Vapar_5136(PF09084)ER
543728.Vapar_1121(PF13091)ER
543728.Vapar_2931(PF13458)ER
543728.Vapar_2930(PF13458)ER
543728.Vapar_1912(PF09084)mitochondrial; (mitochondrial)
543728.Vapar_1747(PF13458)(ER); ER
543728.Vapar_3211(PF00920)(mitochondrial)
543728.Vapar_4479(PF02558)(ER); ER
543728.Vapar_2974(PF09084)mitochondrial
543728.Vapar_2978(PF09084)mitochondrial; (mitochondrial)
543728.Vapar_4758(PF09084)ER
543728.Vapar_3969(PF09084)ER
543728.Vapar_0436(PF13458)(ER)
543728.Vapar_4437(PF13449)(mitochondrial)
543728.Vapar_3128(PF13458)(ER)
543728.Vapar_5482(PF07519)(plastid)
543728.Vapar_0334(PF10994)(mitochondrial)
543728.Vapar_2107(PF01323)(ER)
543728.Vapar_0182(PF13458)(ER)
543728.Vapar_6050(PF02317) (PF02558)
543728.Vapar_0795(PF12399)(plastid)
543728.Vapar_6327(PF13091)(mitochondrial)
543728.Vapar_1866(PF02201)(mitochondrial)
543728.Vapar_4718(PF07110)
543728.Vapar_0275(PF00857)
543728.Vapar_0273(PF00857)
543728.Vapar_5384(PF00857)
543728.Vapar_0804(PF00857)
543728.Vapar_5978(PF07110)
543728.Vapar_2652(PF13091)
543728.Vapar_5973(PF12399)
543728.Vapar_6287(PF07519)
543728.Vapar_3083(PF02655)
543728.Vapar_3860(PF13091)
543728.Vapar_5652(PF04444)
543728.Vapar_6005(PF03576)
543728.Vapar_6000(PF08843)
543728.Vapar_4515(PF08843)
543728.Vapar_5202(PF02201)
543728.Vapar_1584(PF12399)
543728.Vapar_3069(PF02655)
543728.Vapar_0084(PF12399)
543728.Vapar_4304(PF02558)
543728.Vapar_6261(PF00920)
543728.Vapar_3023(PF00162)
543728.Vapar_3006(PF03576)
543728.Vapar_0488(PF00857)
543728.Vapar_6225(PF07110)
543728.Vapar_0670PF13816
543728.Vapar_5101(PF00162)
543728.Vapar_2418(PF12399)
543728.Vapar_1290(PF12399)
543728.Vapar_3421(PF00857)
543728.Vapar_6149(PF07519)
543728.Vapar_5798(PF13020)
543728.Vapar_6045(PF00857)
543728.Vapar_1463(PF00857)
543728.Vapar_4839(PF00857)
543728.Vapar_5711(PF00920)
543728.Vapar_1485(PF02317)
543728.Vapar_0638(PF00857)
543728.Vapar_1901(PF09084)
543728.Vapar_4851(PF00857)
543728.Vapar_6134(PF12399)
543728.Vapar_2103(PF12399)
543728.Vapar_3677(PF03576)
543728.Vapar_2927(PF12399)
543728.Vapar_0185(PF12399)
543728.Vapar_5697(PF00920)
543728.Vapar_1753(PF01323)
543728.Vapar_1750(PF12399)
543728.Vapar_6055(PF14588)
543728.Vapar_5310(PF04444)
543728.Vapar_0420(PF02317)
543728.Vapar_4938(PF12399)
543728.Vapar_3487(PF12399)
543728.Vapar_2169(PF00857)
543728.Vapar_0204(PF13599)
543728.Vapar_5353(PF01323)
543728.Vapar_4009(PF12399)
543728.Vapar_3175(PF02558)
543728.Vapar_0465(PF12399)
543728.Vapar_2530(PF00920)
543728.Vapar_0266(PF09084)
543728.Vapar_5472(PF00857)
543728.Vapar_1051(PF00920)
543728.Vapar_4566(PF13020)
543728.Vapar_0012(PF13091)
543728.Vapar_3708(PF00920)
543728.Vapar_0819(PF01323)
543728.Vapar_2663(PF12471)
543728.Vapar_2662(PF07958)
543728.Vapar_2868(PF13599)
543728.Vapar_3872(PF09084)
543728.Vapar_4298(PF12399)
543728.Vapar_4294(PF00857)
543728.Vapar_5847(PF08843)
543728.Vapar_0898(PF01323)
543728.Vapar_3689(PF00920)
543728.Vapar_6011(PF03576)
543728.Vapar_5007(PF12399)
543728.Vapar_0363(PF12399)
543728.Vapar_0091(PF16155)
543728.Vapar_3318(PF01323)
543728.Vapar_3781(PF13599)
543728.Vapar_2002(PF00857)
543728.Vapar_2788(PF14588)
543728.Vapar_0130(PF04444)
543728.Vapar_3355(PF13599)
543728.Vapar_0643(PF13458)
543728.Vapar_4931(PF01323)
543728.Vapar_3891(PF12899)
543728.Vapar_3642(PF10994)
543728.Vapar_2115(PF07519)
543728.Vapar_1916(PF00857)
543728.Vapar_6133(PF13458)
543728.Vapar_6138(PF04444)
543728.Vapar_1743(PF13091)
543728.Vapar_0237(PF00920)
543728.Vapar_2540PF13816
543728.Vapar_4419(PF05189)
543728.Vapar_3142(PF12399)
543728.Vapar_5666(PF08843)
543728.Vapar_0234(PF02558)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================