Effective results for Corynebacterium glucuronolyticum ATCC 51867 (eggnog40)

Summary

Number of putative secreted proteins: 26
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 26 proteins (1 high, 25 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
548477.HMPREF0294_0648				(PF01195)	(ER)
548477.HMPREF0294_1484				(PF16656)	ER
548477.HMPREF0294_0539				(PF16656)	ER
548477.HMPREF0294_0538				(PF16656)	(ER)
548477.HMPREF0294_2301				(PF08310)	ER
548477.HMPREF0294_2285				(PF08310)	(ER); ER
548477.HMPREF0294_2243				(PF08310)	(ER)
548477.HMPREF0294_0995				(PF08310)	ER
548477.HMPREF0294_2495				(PF01844)
548477.HMPREF0294_2397				(PF01844)
548477.HMPREF0294_2643				(PF01844)	not used
548477.HMPREF0294_0664				(PF01844)
548477.HMPREF0294_1807				(PF08310)
548477.HMPREF0294_0851				(PF01844)
548477.HMPREF0294_0146				(PF01844)
548477.HMPREF0294_2216				(PF01844)
548477.HMPREF0294_0023				(PF01844)
548477.HMPREF0294_2374				(PF01844)	not used
548477.HMPREF0294_0540				(PF16656)
548477.HMPREF0294_1161				(PF08354)	not used
548477.HMPREF0294_1061				(PF01195)
548477.HMPREF0294_0554				(PF01844)
548477.HMPREF0294_0772				(PF01844)
548477.HMPREF0294_2428				(PF01844)
548477.HMPREF0294_0345				PF08213	not used
548477.HMPREF0294_0637				(PF01844)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================