Effective results for Ferrimonas balearica DSM 9799 (eggnog40)

Summary

Number of putative secreted proteins: 44
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 44 proteins (2 high, 42 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
550540.Fbal_2847				(PF02225) PF05887	(ER)
550540.Fbal_1310				(PF13402)	ER
550540.Fbal_3632				(PF04879)	mitochondrial; (mitochondrial)
550540.Fbal_1676				(PF01346)	ER
550540.Fbal_1331				(PF08443)	mitochondrial
550540.Fbal_2520				(PF02225)	ER
550540.Fbal_0461				(PF02225)	ER
550540.Fbal_1687				(PF01346)	ER
550540.Fbal_2730				(PF02225)	(ER)
550540.Fbal_1170				(PF09295)	ER
550540.Fbal_1496				(PF04879)	mitochondrial
550540.Fbal_3416				(PF02225)	ER
550540.Fbal_3413				(PF02225)	ER
550540.Fbal_0665				(PF02225)	ER
550540.Fbal_0664				(PF02225)	ER
550540.Fbal_1245				(PF02225)	ER
550540.Fbal_2429				(PF04879)	ER; (ER)
550540.Fbal_2974				(PF01346)	ER
550540.Fbal_3112				(PF13402)	ER
550540.Fbal_1669				(PF01346)	ER
550540.Fbal_2048				(PF03199) (PF03917)
550540.Fbal_1959				(PF04879)	(mitochondrial)
550540.Fbal_3628				(PF04879)	(ER)
550540.Fbal_3625				(PF04879)	(ER)
550540.Fbal_3320				(PF08443)
550540.Fbal_3636				(PF04879)
550540.Fbal_2025				(PF10013)	not used
550540.Fbal_3001				PF01536
550540.Fbal_1794				(PF04879)
550540.Fbal_2232				(PF12344)
550540.Fbal_1322				(PF12344)
550540.Fbal_2070				(PF04879)
550540.Fbal_2476				(PF04879)
550540.Fbal_1218				(PF08443)
550540.Fbal_0392				(PF05706)
550540.Fbal_2887				(PF01346)
550540.Fbal_3590				(PF04879)
550540.Fbal_3582				(PF04879)
550540.Fbal_3586				(PF04879)
550540.Fbal_0235				(PF04879)
550540.Fbal_3111				(PF13402)
550540.Fbal_3113				(PF08443)
550540.Fbal_3621				(PF04879)
550540.Fbal_1405				(PF08443)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: YES (FDR = 7.7 %)
  Estimated copy number = 0.625 (5/8 KEGG proteins)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================