Metamenu

Effective results for Corynebacterium matruchotii ATCC 14266 (eggnog40)

Summary

Number of putative secreted proteins: 20
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 20 proteins (0 high, 20 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
553207.HMPREF0299_6742(PF08840)ER
553207.HMPREF0299_6743(PF08840)ER
553207.HMPREF0299_7570(PF12821)mitochondrial
553207.HMPREF0299_5572(PF01195)mitochondrial
553207.HMPREF0299_5463(PF00079)ER
553207.HMPREF0299_5570(PF01195)(plastid)
553207.HMPREF0299_6317(PF05154)
553207.HMPREF0299_5849(PF05154)
553207.HMPREF0299_7577(PF12821)
553207.HMPREF0299_7102(PF08354)
553207.HMPREF0299_7456(PF05154)
553207.HMPREF0299_7080(PF12821)
553207.HMPREF0299_5036(PF14885)
553207.HMPREF0299_7277(PF06414)
553207.HMPREF0299_7276(PF06414)
553207.HMPREF0299_6074(PF07720)
553207.HMPREF0299_7425(PF04446)
553207.HMPREF0299_5464(PF00079)
553207.HMPREF0299_5465(PF00079)
553207.HMPREF0299_6269(PF08354)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================