Metamenu

Effective results for Dethiobacter alkaliphilus AHT 1 (eggnog40)

Summary

Number of putative secreted proteins: 73
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 23 eukaryotic-like domains, contained in 73 proteins (2 high, 71 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
555088.DealDRAFT_1039(PF13187) (PF00037)ER
555088.DealDRAFT_0024(PF01855) (PF17147)(mitochondrial); plastid
555088.DealDRAFT_2253(PF02915)(mitochondrial)
555088.DealDRAFT_2950(PF01169)ER
555088.DealDRAFT_2738(PF01169)ER
555088.DealDRAFT_1751(PF00862)ER
555088.DealDRAFT_0344(PF06695)ER
555088.DealDRAFT_1149(PF01558) (PF01855)(plastid)
555088.DealDRAFT_1567(PF06695)ER
555088.DealDRAFT_3014(PF02643)mitochondrial
555088.DealDRAFT_2223(PF00037)(mitochondrial)
555088.DealDRAFT_0082(PF01558) (PF01855) (PF17147)
555088.DealDRAFT_2781(PF01855) (PF17147)(mitochondrial)
555088.DealDRAFT_0450(PF01558)(mitochondrial)
555088.DealDRAFT_2904(PF01169)(ER)
555088.DealDRAFT_2911(PF13187)(mitochondrial); mitochondrial
555088.DealDRAFT_0605(PF01855) (PF17147)
555088.DealDRAFT_1245(PF01855) (PF17147)
555088.DealDRAFT_2926(PF07224)(ER)
555088.DealDRAFT_0806(PF02643)(mitochondrial)
555088.DealDRAFT_0020(PF01855) (PF17147)
555088.DealDRAFT_2553(PF01558)(mitochondrial)
555088.DealDRAFT_2551(PF01855) (PF17147)
555088.DealDRAFT_0448(PF01855) (PF17147)
555088.DealDRAFT_2598(PF00037) (PF01855)
555088.DealDRAFT_0041(PF02915)
555088.DealDRAFT_0603(PF01558)
555088.DealDRAFT_1247(PF01558)
555088.DealDRAFT_1240(PF02915)
555088.DealDRAFT_0863(PF09419)
555088.DealDRAFT_0075(PF03059)
555088.DealDRAFT_1816(PF00037)
555088.DealDRAFT_1819(PF00037)
555088.DealDRAFT_3084PF04910
555088.DealDRAFT_1752(PF00862)
555088.DealDRAFT_3090(PF01964)
555088.DealDRAFT_3091(PF01964)
555088.DealDRAFT_0656(PF02643)not used
555088.DealDRAFT_1748(PF13187)
555088.DealDRAFT_2247(PF00037)
555088.DealDRAFT_3134(PF02787)
555088.DealDRAFT_2406(PF13187)not used
555088.DealDRAFT_0137(PF00958)
555088.DealDRAFT_1997(PF13187)
555088.DealDRAFT_2278(PF14249)
555088.DealDRAFT_2505(PF02943)
555088.DealDRAFT_3057(PF02915)
555088.DealDRAFT_0037(PF02915)
555088.DealDRAFT_1209(PF02787)
555088.DealDRAFT_0022(PF01558)
555088.DealDRAFT_2516(PF13911)
555088.DealDRAFT_0685(PF00037)
555088.DealDRAFT_1379(PF13187)
555088.DealDRAFT_0978(PF00037)
555088.DealDRAFT_1798(PF00037)
555088.DealDRAFT_0568(PF00037)
555088.DealDRAFT_0302(PF01964)
555088.DealDRAFT_2948(PF13187)
555088.DealDRAFT_1236(PF02873)
555088.DealDRAFT_1432(PF00037)
555088.DealDRAFT_2319(PF02787)
555088.DealDRAFT_2554(PF00037)
555088.DealDRAFT_1345(PF02873)
555088.DealDRAFT_1682(PF01991)
555088.DealDRAFT_2787(PF02915)
555088.DealDRAFT_2783(PF01558)
555088.DealDRAFT_2782(PF00037)
555088.DealDRAFT_1858(PF00958)
555088.DealDRAFT_1101(PF00037)
555088.DealDRAFT_2773(PF13187)
555088.DealDRAFT_1718(PF00037)not used
555088.DealDRAFT_2743PF10473
555088.DealDRAFT_2597(PF01558)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================