Metamenu

Effective results for Streptococcus sp. M334 (eggnog40)

Summary

Number of putative secreted proteins: 114
- Predicted by T4SEpre: 116
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 29 proteins (2 high, 27 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
563038.HMPREF0851_00048(PF04991)(ER)
563038.HMPREF0851_01981+ER
563038.HMPREF0851_01500+(mitochondrial); plastid
563038.HMPREF0851_01059(PF03083)(ER)
563038.HMPREF0851_00676+(mitochondrial)
563038.HMPREF0851_01078+ER
563038.HMPREF0851_01121(PF06280)ER
563038.HMPREF0851_01444(PF03644)(mitochondrial)
563038.HMPREF0851_01445+ER
563038.HMPREF0851_00622+ER
563038.HMPREF0851_01874+ER
563038.HMPREF0851_00385+mitochondrial
563038.HMPREF0851_01003(PF00344)(mitochondrial); (plastid)
563038.HMPREF0851_00512+(ER); (mitochondrial)
563038.HMPREF0851_00515+ER
563038.HMPREF0851_00514+ER
563038.HMPREF0851_00658+ER
563038.HMPREF0851_01103+ER
563038.HMPREF0851_00721(PF06280)(ER)
563038.HMPREF0851_01246+(mitochondrial); (plastid)
563038.HMPREF0851_00406+mitochondrial
563038.HMPREF0851_01581+mitochondrial
563038.HMPREF0851_01699+mitochondrial; (mitochondrial)
563038.HMPREF0851_00969PF09683ER
563038.HMPREF0851_01689+ER
563038.HMPREF0851_01779+ER
563038.HMPREF0851_01781+(mitochondrial)
563038.HMPREF0851_00092+mitochondrial
563038.HMPREF0851_00157+ER
563038.HMPREF0851_01550(PF00344)ER; (ER)
563038.HMPREF0851_01893PF09683ER
563038.HMPREF0851_01882+(ER)
563038.HMPREF0851_01408+(mitochondrial)
563038.HMPREF0851_00830+(mitochondrial)
563038.HMPREF0851_00375+(PF06414)
563038.HMPREF0851_01547+(PF01501)
563038.HMPREF0851_00820+(mitochondrial)
563038.HMPREF0851_00098+(PF06414)
563038.HMPREF0851_00917+
563038.HMPREF0851_01538+
563038.HMPREF0851_01183+
563038.HMPREF0851_00057(PF04991)
563038.HMPREF0851_00673(PF05495)
563038.HMPREF0851_00689+
563038.HMPREF0851_00062(PF01633)
563038.HMPREF0851_00802+
563038.HMPREF0851_00247+
563038.HMPREF0851_01290+
563038.HMPREF0851_00106+
563038.HMPREF0851_00257+
563038.HMPREF0851_01679(PF03883)
563038.HMPREF0851_00490+
563038.HMPREF0851_01701+
563038.HMPREF0851_00657+
563038.HMPREF0851_00840+
563038.HMPREF0851_00381+
563038.HMPREF0851_02086+
563038.HMPREF0851_02080+
563038.HMPREF0851_02082+
563038.HMPREF0851_02089+
563038.HMPREF0851_01667(PF03883)
563038.HMPREF0851_00623+
563038.HMPREF0851_01718+
563038.HMPREF0851_00537(PF03714)
563038.HMPREF0851_02092+
563038.HMPREF0851_01659+
563038.HMPREF0851_01725+
563038.HMPREF0851_00529+
563038.HMPREF0851_02062+
563038.HMPREF0851_01864+
563038.HMPREF0851_01004+
563038.HMPREF0851_01390+
563038.HMPREF0851_01480+
563038.HMPREF0851_00513+
563038.HMPREF0851_02078+
563038.HMPREF0851_01033+
563038.HMPREF0851_01107+
563038.HMPREF0851_01053+
563038.HMPREF0851_00729+
563038.HMPREF0851_00610(PF01633)
563038.HMPREF0851_01809+
563038.HMPREF0851_01247+
563038.HMPREF0851_01249+
563038.HMPREF0851_00999+
563038.HMPREF0851_00195+
563038.HMPREF0851_00977(PF03714)
563038.HMPREF0851_00973+
563038.HMPREF0851_00373+
563038.HMPREF0851_00379(PF13151)
563038.HMPREF0851_02051+
563038.HMPREF0851_00747(PF03083)
563038.HMPREF0851_01683+
563038.HMPREF0851_01916+
563038.HMPREF0851_01359+
563038.HMPREF0851_01685(PF03883)
563038.HMPREF0851_00883+
563038.HMPREF0851_00229+
563038.HMPREF0851_00794+
563038.HMPREF0851_02030+not used
563038.HMPREF0851_01215+
563038.HMPREF0851_01214+
563038.HMPREF0851_00762+
563038.HMPREF0851_01541(PF01501)
563038.HMPREF0851_01543(PF01501)
563038.HMPREF0851_01542+
563038.HMPREF0851_01546(PF01501)
563038.HMPREF0851_00095+
563038.HMPREF0851_00541+
563038.HMPREF0851_01548(PF01501)
563038.HMPREF0851_01428+
563038.HMPREF0851_01308(PF08975)
563038.HMPREF0851_00453+
563038.HMPREF0851_00058(PF04991)
563038.HMPREF0851_01883+not used

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0 (0/0 KEGG proteins)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================