Metamenu

Effective results for Lactobacillus coleohominis 101-4-CHN (eggnog40)

Summary

Number of putative secreted proteins: 16
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 4 eukaryotic-like domains, contained in 16 proteins (1 high, 15 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
575594.HMPREF0501_00233(PF03577)ER
575594.HMPREF0501_00626(PF03577)(mitochondrial)
575594.HMPREF0501_00320(PF03577)mitochondrial
575594.HMPREF0501_01230PF08538(ER)
575594.HMPREF0501_00499(PF13240)ER; not used
575594.HMPREF0501_01301(PF13240)
575594.HMPREF0501_01300(PF13240)
575594.HMPREF0501_00689(PF03577)
575594.HMPREF0501_01605(PF00579)not used
575594.HMPREF0501_00643(PF00579)
575594.HMPREF0501_00640(PF00579)
575594.HMPREF0501_01297(PF13240)
575594.HMPREF0501_01295(PF13240)
575594.HMPREF0501_01504(PF03577)
575594.HMPREF0501_00638(PF00579)
575594.HMPREF0501_01606(PF00579)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================