Effective results for Sideroxydans lithotrophicus ES-1 (eggnog40)

Summary

Number of putative secreted proteins: 23
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 23 proteins (2 high, 21 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
580332.Slit_2134(PF12483)mitochondrial
580332.Slit_2629(PF07382)(mitochondrial)
580332.Slit_0476(PF07382)(mitochondrial)
580332.Slit_2240PF02140(ER)
580332.Slit_1567(PF01814)
580332.Slit_1302(PF01814)
580332.Slit_2822(PF01814)
580332.Slit_2549(PF01814)
580332.Slit_2372(PF01814)
580332.Slit_1555(PF01814)
580332.Slit_0204PF08784
580332.Slit_0061(PF01814)
580332.Slit_2363(PF01814)
580332.Slit_2342(PF01814)
580332.Slit_0873(PF01814)
580332.Slit_0474(PF01491)
580332.Slit_0473(PF01491)
580332.Slit_2553(PF01991)
580332.Slit_1673(PF13875)
580332.Slit_2092(PF01814)
580332.Slit_2276(PF14721)
580332.Slit_2678(PF01814)
580332.Slit_1117(PF01814)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================