Effective results for Streptococcus mitis SK321 (eggnog40)

Summary

Number of putative secreted proteins: 71
- Predicted by T4SEpre: 71
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 14 proteins (3 high, 11 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
585202.SMSK321_0958				PF09683	ER
585202.SMSK321_1507			+		ER
585202.SMSK321_1168			+		ER
585202.SMSK321_0752			+		ER
585202.SMSK321_0564				(PF05704)	mitochondrial
585202.SMSK321_0316			+		ER
585202.SMSK321_1541			+		ER
585202.SMSK321_1599			+		ER
585202.SMSK321_1211				PF09683	ER; (ER)
585202.SMSK321_0488			+		ER
585202.SMSK321_0193			+		ER
585202.SMSK321_1009			+		(mitochondrial); (plastid)
585202.SMSK321_0059			+		mitochondrial
585202.SMSK321_1496				(PF03083)	(ER)
585202.SMSK321_1709				(PF03596)	ER
585202.SMSK321_0489			+		ER
585202.SMSK321_1738				PF02916	ER
585202.SMSK321_0245				(PF03083)	ER
585202.SMSK321_1650			+		ER
585202.SMSK321_1639			+		mitochondrial; (mitochondrial)
585202.SMSK321_1097			+		(mitochondrial)
585202.SMSK321_0150			+		(mitochondrial)
585202.SMSK321_0134			+
585202.SMSK321_0220			+
585202.SMSK321_0221			+
585202.SMSK321_1617			+
585202.SMSK321_0026			+
585202.SMSK321_0206			+
585202.SMSK321_0971			+
585202.SMSK321_0375			+
585202.SMSK321_0189			+
585202.SMSK321_0168			+
585202.SMSK321_0301			+
585202.SMSK321_0413			+
585202.SMSK321_1453			+
585202.SMSK321_0176			+
585202.SMSK321_0779			+
585202.SMSK321_0794				(PF04991)
585202.SMSK321_1047			+
585202.SMSK321_0541			+
585202.SMSK321_1237			+
585202.SMSK321_0432			+
585202.SMSK321_1122			+
585202.SMSK321_1207			+
585202.SMSK321_1063				(PF08975)
585202.SMSK321_0521			+
585202.SMSK321_1698			+
585202.SMSK321_1459			+
585202.SMSK321_0847			+
585202.SMSK321_0440			+
585202.SMSK321_1486			+
585202.SMSK321_0295			+
585202.SMSK321_0474			+
585202.SMSK321_1475			+
585202.SMSK321_1011			+
585202.SMSK321_1702			+
585202.SMSK321_0265			+
585202.SMSK321_0462			+
585202.SMSK321_1736			+
585202.SMSK321_1257			+
585202.SMSK321_0703				(PF04991)
585202.SMSK321_0702				(PF04991)
585202.SMSK321_1381			+
585202.SMSK321_0490			+
585202.SMSK321_0925				(PF03596)
585202.SMSK321_0660				(PF12344)
585202.SMSK321_0714			+
585202.SMSK321_1622			+
585202.SMSK321_0657				(PF12344)
585202.SMSK321_1637			+
585202.SMSK321_1743			+

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0 (0/0 KEGG proteins)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================