Effective results for Streptococcus mitis SK597 (eggnog40)

Summary

Number of putative secreted proteins: 80
- Predicted by T4SEpre: 84
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 13 proteins (5 high, 8 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
585204.SMSK597_0293			+		ER
585204.SMSK597_0030				PF04103	ER
585204.SMSK597_1514			+		ER
585204.SMSK597_1853			+		mitochondrial; (mitochondrial)
585204.SMSK597_0616			+		ER
585204.SMSK597_1339			+		(mitochondrial)
585204.SMSK597_1812			+		ER
585204.SMSK597_0783			+		ER
585204.SMSK597_1367			+		ER
585204.SMSK597_0145				(PF03714)	(mitochondrial)
585204.SMSK597_0567				PF03083	ER
585204.SMSK597_0002				PF03083	(ER)
585204.SMSK597_0004				PF03083	(ER)
585204.SMSK597_1772			+		ER
585204.SMSK597_0227				PF02916	(ER)
585204.SMSK597_1581			+		ER
585204.SMSK597_0989			+		ER
585204.SMSK597_0982			+		(ER); (mitochondrial)
585204.SMSK597_0345			+		mitochondrial
585204.SMSK597_1105			+		ER
585204.SMSK597_1119				(PF04991)	mitochondrial; (mitochondrial)
585204.SMSK597_1389			+		(mitochondrial); (plastid)
585204.SMSK597_1136			+		(mitochondrial)
585204.SMSK597_1506			+		(mitochondrial)
585204.SMSK597_1304			+		(mitochondrial)
585204.SMSK597_0440			+		(mitochondrial)
585204.SMSK597_0535			+		(mitochondrial)
585204.SMSK597_1657			+
585204.SMSK597_0708			+
585204.SMSK597_1273			+
585204.SMSK597_1278			+
585204.SMSK597_1653			+
585204.SMSK597_0873			+
585204.SMSK597_0600			+
585204.SMSK597_0112			+
585204.SMSK597_1851			+
585204.SMSK597_0610			+
585204.SMSK597_0850			+
585204.SMSK597_0107			+
585204.SMSK597_1828			+
585204.SMSK597_0424			+
585204.SMSK597_1191			+
585204.SMSK597_0958			+
585204.SMSK597_1530			+
585204.SMSK597_0313			+
585204.SMSK597_0655			+
585204.SMSK597_1834			+
585204.SMSK597_1303			+
585204.SMSK597_1302				(PF03596)
585204.SMSK597_0014			+
585204.SMSK597_0549			+
585204.SMSK597_0301			+
585204.SMSK597_1044				(PF04991)
585204.SMSK597_1048				(PF04991)
585204.SMSK597_0150			+
585204.SMSK597_0955			+
585204.SMSK597_1031			+
585204.SMSK597_1769			+
585204.SMSK597_0360			+
585204.SMSK597_1026			+
585204.SMSK597_1023			+
585204.SMSK597_0178			+
585204.SMSK597_0174			+
585204.SMSK597_0517			+
585204.SMSK597_0990			+
585204.SMSK597_1348			+
585204.SMSK597_0980			+
585204.SMSK597_0695			+
585204.SMSK597_0183				(PF03596)
585204.SMSK597_0868				(PF03714)
585204.SMSK597_1590			+
585204.SMSK597_0536			+
585204.SMSK597_1619			+
585204.SMSK597_0089			+
585204.SMSK597_0266			+
585204.SMSK597_0473			+
585204.SMSK597_0861			+
585204.SMSK597_1710			+
585204.SMSK597_1391			+
585204.SMSK597_1451				(PF08975)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0 (0/0 KEGG proteins)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================