Effective results for Weissella paramesenteroides ATCC 33313 (eggnog40)

Summary

Number of putative secreted proteins: 16
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 16 proteins (0 high, 16 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
585506.HMPREF0877_1747(PF06026)ER
585506.HMPREF0877_0834(PF03306)(ER)
585506.HMPREF0877_0057(PF12949)(mitochondrial)
585506.HMPREF0877_0028(PF00121)mitochondrial
585506.HMPREF0877_1195(PF00121)
585506.HMPREF0877_1524(PF06421)
585506.HMPREF0877_0831(PF05014)
585506.HMPREF0877_1824(PF06100)
585506.HMPREF0877_0327(PF03306)
585506.HMPREF0877_1048(PF06100)
585506.HMPREF0877_0193(PF05014)
585506.HMPREF0877_0707(PF00121)
585506.HMPREF0877_0376(PF06026)
585506.HMPREF0877_0366(PF05014)
585506.HMPREF0877_0568(PF06026)
585506.HMPREF0877_1772(PF06421)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================