Metamenu

Effective results for Gardnerella vaginalis ATCC 14018 = JCM 11026 (eggnog40)

Summary

Number of putative secreted proteins: 10
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 10 proteins (0 high, 10 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
585528.GvagA14_010100002768(PF11070)ER; (ER)
585528.GvagA14_010100001890(PF03423)(ER)
585528.GvagA14_010100006007(PF03596)ER
585528.GvagA14_010100003940(PF01121)(mitochondrial)
585528.GvagA14_010100002567(PF03596)ER
585528.GvagA14_010100003950(PF01121)not used
585528.GvagA14_010100000202(PF00318)not used
585528.GvagA14_010100003013(PF11969)
585528.GvagA14_010100003646(PF08354)
585528.GvagA14_010100002065(PF00318)not used

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================