Metamenu

Effective results for Corynebacterium genitalium ATCC 33030 (eggnog40)

Summary

Number of putative secreted proteins: 16
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 16 proteins (2 high, 14 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
585529.HMPREF0291_12030(PF05076)mitochondrial
585529.HMPREF0291_12055(PF01195)(ER)
585529.HMPREF0291_10247PF00673 PF00281
585529.HMPREF0291_10254PF00673 PF00281
585529.HMPREF0291_10476(PF13518)
585529.HMPREF0291_11717(PF14078)
585529.HMPREF0291_11715(PF00755)
585529.HMPREF0291_10044(PF14078)
585529.HMPREF0291_10457(PF05076)
585529.HMPREF0291_11872(PF13518)
585529.HMPREF0291_11472(PF13518)
585529.HMPREF0291_11053(PF13518)
585529.HMPREF0291_11326(PF05076)
585529.HMPREF0291_11026(PF13518)
585529.HMPREF0291_12050(PF01195)
585529.HMPREF0291_11654(PF13518)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================