Metamenu

Effective results for Clostridium botulinum D str. 1873 (eggnog40)

Summary

Number of putative secreted proteins: 21
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 21 proteins (6 high, 15 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
592027.CLG_B1206(PF01477) (PF00882)ER
592027.CLG_B2094(PF14566)ER
592027.CLG_B0976PF03188ER
592027.CLG_B1458(PF00882)mitochondrial
592027.CLG_B0486(PF09683)ER
592027.CLG_B0523(PF08367)ER
592027.CLG_B0258PF01633
592027.CLG_B0255PF01633
592027.CLG_B1970(PF07892)
592027.CLG_B0797(PF12862)
592027.CLG_B1168PF01633
592027.CLG_B2136(PF09818)
592027.CLG_B1171PF01633
592027.CLG_B1436(PF08367)
592027.CLG_B0200(PF12646)
592027.CLG_B0695(PF01693)
592027.CLG_B1452(PF01991)
592027.CLG_B0236(PF07892)
592027.CLG_B0273PF01633
592027.CLG_B1874(PF09818)
592027.CLG_B1515(PF01693)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================