Metamenu

Effective results for Pantoea sp. At-9b (eggnog40)

Summary

Number of putative secreted proteins: 487
- Predicted by EffectiveT3: 162 (high confidence), 244 (low confidence)
- Predicted by EffectiveCCBD: 22 within, 23 before, 27 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 25 proteins (2 high, 23 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type III)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
592316.Pat9b_3408+(mitochondrial); (plastid)
592316.Pat9b_0323(>)(mitochondrial); (ER)
592316.Pat9b_1472+(mitochondrial); (plastid)
592316.Pat9b_2079(<)ER
592316.Pat9b_3783(>)ER
592316.Pat9b_2247(>)ER
592316.Pat9b_2536+(ER); (mitochondrial)
592316.Pat9b_0025++(mitochondrial)
592316.Pat9b_1260+ER; (ER)
592316.Pat9b_1042+ER
592316.Pat9b_0907(PF00328)ER
592316.Pat9b_3437+(mitochondrial)
592316.Pat9b_1209+ER
592316.Pat9b_1735(<)ER; (ER)
592316.Pat9b_2452(>)ER
592316.Pat9b_3908+(mitochondrial)
592316.Pat9b_0673(<)(mitochondrial)
592316.Pat9b_2297(>)ER
592316.Pat9b_0779+(mitochondrial)
592316.Pat9b_0114(PF03552)ER
592316.Pat9b_0445(>)ER
592316.Pat9b_0127+(ER)
592316.Pat9b_0122(PF03552)(ER)
592316.Pat9b_3361+ER
592316.Pat9b_0635(<)ER
592316.Pat9b_0136(>)(ER)
592316.Pat9b_3162(>)ER
592316.Pat9b_1384(PF00328)ER
592316.Pat9b_1766+ER
592316.Pat9b_0960(>)ER
592316.Pat9b_3055+ER
592316.Pat9b_3490+(ER)
592316.Pat9b_0566(PF05704)mitochondrial
592316.Pat9b_1816+ER
592316.Pat9b_2226+ER
592316.Pat9b_2450(PF01116)(mitochondrial)
592316.Pat9b_0346(>)ER
592316.Pat9b_2846+ER
592316.Pat9b_3470+(mitochondrial)
592316.Pat9b_3258+(mitochondrial)
592316.Pat9b_1839(<)ER
592316.Pat9b_2101+(mitochondrial); (plastid)
592316.Pat9b_1383(+)(ER)
592316.Pat9b_1332(+)+(ER)
592316.Pat9b_1468(+)(mitochondrial)
592316.Pat9b_0600+(ER)
592316.Pat9b_1997(+)(mitochondrial)
592316.Pat9b_2884(+)mitochondrial
592316.Pat9b_3922(+)(mitochondrial)
592316.Pat9b_0079++
592316.Pat9b_2293(+)(ER)
592316.Pat9b_3168(PF09347)(plastid)
592316.Pat9b_0403+(plastid)
592316.Pat9b_0846(<)(ER)
592316.Pat9b_2375+plastid
592316.Pat9b_2377(+)+(ER)
592316.Pat9b_0054+
592316.Pat9b_2760(+)(mitochondrial)
592316.Pat9b_3998+(plastid)
592316.Pat9b_0951(+)(mitochondrial); mitochondrial
592316.Pat9b_3742(>)(mitochondrial)
592316.Pat9b_0099+(PF09347)
592316.Pat9b_0965(+)(mitochondrial)
592316.Pat9b_2120+(plastid)
592316.Pat9b_0086(+)(mitochondrial)
592316.Pat9b_2830+(plastid)
592316.Pat9b_3530+(mitochondrial)
592316.Pat9b_3992+(mitochondrial)
592316.Pat9b_3668+(>)
592316.Pat9b_1657(+)(ER)
592316.Pat9b_3678+(mitochondrial)
592316.Pat9b_0171(+)ER
592316.Pat9b_2119(<)(mitochondrial)
592316.Pat9b_1825(+)ER
592316.Pat9b_3254(+)(mitochondrial); (plastid)
592316.Pat9b_0524(+)(ER)
592316.Pat9b_3096(+)(mitochondrial)
592316.Pat9b_0351(<)
592316.Pat9b_2106+
592316.Pat9b_0828(>)
592316.Pat9b_1488+
592316.Pat9b_1461+
592316.Pat9b_1465+
592316.Pat9b_1467+
592316.Pat9b_1466(+)(plastid)
592316.Pat9b_3673(<)
592316.Pat9b_2314+
592316.Pat9b_1934+
592316.Pat9b_3319+
592316.Pat9b_0684+
592316.Pat9b_3137(<)
592316.Pat9b_3136+
592316.Pat9b_0229+
592316.Pat9b_0819+
592316.Pat9b_1259+
592316.Pat9b_1473+
592316.Pat9b_2678+
592316.Pat9b_2098+
592316.Pat9b_2414+
592316.Pat9b_2417+
592316.Pat9b_2258PF04765
592316.Pat9b_0786+
592316.Pat9b_0251+
592316.Pat9b_0337(+)(mitochondrial)
592316.Pat9b_0332+
592316.Pat9b_2533+
592316.Pat9b_2537+
592316.Pat9b_1262+
592316.Pat9b_1047+
592316.Pat9b_2064+(>)
592316.Pat9b_2063+
592316.Pat9b_2084+
592316.Pat9b_1680(+)(>)
592316.Pat9b_3863+
592316.Pat9b_2242+
592316.Pat9b_3201(PF01116)
592316.Pat9b_0790+
592316.Pat9b_1149+
592316.Pat9b_1798(PF01116)
592316.Pat9b_1797(>)
592316.Pat9b_2888(+)(ER)
592316.Pat9b_0010+
592316.Pat9b_0871+
592316.Pat9b_0706+
592316.Pat9b_2655+
592316.Pat9b_2267(<)
592316.Pat9b_2434(+)plastid
592316.Pat9b_3433(PF05929)
592316.Pat9b_2509+
592316.Pat9b_3211+
592316.Pat9b_3749+
592316.Pat9b_3810+
592316.Pat9b_1794(PF09330)
592316.Pat9b_2522+
592316.Pat9b_1194(>)
592316.Pat9b_1192(PF09330)
592316.Pat9b_0869+
592316.Pat9b_1207+
592316.Pat9b_0914(>)
592316.Pat9b_1425+
592316.Pat9b_2649+
592316.Pat9b_2426+
592316.Pat9b_0645+
592316.Pat9b_3356+
592316.Pat9b_3358(>)
592316.Pat9b_2985+
592316.Pat9b_3777+
592316.Pat9b_1994+
592316.Pat9b_1993+
592316.Pat9b_3599+
592316.Pat9b_0076+
592316.Pat9b_0109+
592316.Pat9b_0100(PF09347)
592316.Pat9b_1183+
592316.Pat9b_1219+
592316.Pat9b_0858+
592316.Pat9b_2745+
592316.Pat9b_0585+
592316.Pat9b_3167(PF09347)
592316.Pat9b_0291(+)(mitochondrial)
592316.Pat9b_3013+
592316.Pat9b_2291+
592316.Pat9b_0119(+)(plastid)
592316.Pat9b_1221+
592316.Pat9b_3164(PF09347)
592316.Pat9b_0936+
592316.Pat9b_1086+
592316.Pat9b_3974(>)
592316.Pat9b_3979(<)
592316.Pat9b_1151(+)(plastid)
592316.Pat9b_3374(PF01116)
592316.Pat9b_3435+
592316.Pat9b_0599+
592316.Pat9b_3027+
592316.Pat9b_2262+
592316.Pat9b_1886+
592316.Pat9b_1885(PF01116)
592316.Pat9b_3478+
592316.Pat9b_1091(<)
592316.Pat9b_1097+
592316.Pat9b_1751+
592316.Pat9b_2617(+)(plastid)
592316.Pat9b_2388+
592316.Pat9b_3709+
592316.Pat9b_3039+
592316.Pat9b_1896(+)plastid
592316.Pat9b_0131+
592316.Pat9b_0137+
592316.Pat9b_3161(+)(mitochondrial)
592316.Pat9b_1393+
592316.Pat9b_1395(>)
592316.Pat9b_2216(<)
592316.Pat9b_2772+
592316.Pat9b_2777+
592316.Pat9b_3556+
592316.Pat9b_2556(>)
592316.Pat9b_3827+
592316.Pat9b_2398+
592316.Pat9b_2394+
592316.Pat9b_3732+
592316.Pat9b_1952+
592316.Pat9b_1956+
592316.Pat9b_3042+
592316.Pat9b_3600+
592316.Pat9b_3230+
592316.Pat9b_2673(+)(ER)
592316.Pat9b_2112+
592316.Pat9b_0095+
592316.Pat9b_2804+
592316.Pat9b_1385+
592316.Pat9b_1386(+)(<)
592316.Pat9b_0894+
592316.Pat9b_0893+
592316.Pat9b_3944(+)(<)not used
592316.Pat9b_3942(<)
592316.Pat9b_1768(<)
592316.Pat9b_1760+
592316.Pat9b_1168(<)
592316.Pat9b_3832(>)
592316.Pat9b_3837+
592316.Pat9b_2125+
592316.Pat9b_2123(+)(mitochondrial)
592316.Pat9b_3549+
592316.Pat9b_3050(+)+
592316.Pat9b_3051+
592316.Pat9b_0561(+)(PF05929)
592316.Pat9b_0560+
592316.Pat9b_3563+
592316.Pat9b_2252+
592316.Pat9b_2952+
592316.Pat9b_3362(+)(plastid)
592316.Pat9b_1281+
592316.Pat9b_2108+
592316.Pat9b_1115+
592316.Pat9b_3844+
592316.Pat9b_0848(<)
592316.Pat9b_2005+
592316.Pat9b_3537(>)
592316.Pat9b_2622+
592316.Pat9b_2446+
592316.Pat9b_2221+
592316.Pat9b_0717+
592316.Pat9b_2442(<)
592316.Pat9b_3993(+)(mitochondrial)
592316.Pat9b_3286(+)(mitochondrial)
592316.Pat9b_3285+
592316.Pat9b_3265(+)(plastid)
592316.Pat9b_3197+
592316.Pat9b_3660+
592316.Pat9b_3446+
592316.Pat9b_3463+
592316.Pat9b_0570(+)+
592316.Pat9b_0169+
592316.Pat9b_1158+
592316.Pat9b_2921(+)(PF16485)
592316.Pat9b_2920(+)(plastid)
592316.Pat9b_1293+
592316.Pat9b_1368+
592316.Pat9b_0500+
592316.Pat9b_1581+
592316.Pat9b_1587(>)
592316.Pat9b_1102+
592316.Pat9b_1034(PF01116)
592316.Pat9b_3983(>)
592316.Pat9b_0507(<)
592316.Pat9b_0501+
592316.Pat9b_3373(PF01116)
592316.Pat9b_0217+
592316.Pat9b_1208+
592316.Pat9b_2859+
592316.Pat9b_2975(>)
592316.Pat9b_2932+
592316.Pat9b_1351(+)(plastid)
592316.Pat9b_0994(+)(mitochondrial)
592316.Pat9b_1130(+)PF04765
592316.Pat9b_2202+
592316.Pat9b_2203+
592316.Pat9b_1918(+)(PF09347)
592316.Pat9b_3081+
592316.Pat9b_2843+
592316.Pat9b_1747+
592316.Pat9b_2039+
592316.Pat9b_2034+not used
592316.Pat9b_1014+
592316.Pat9b_3506+
592316.Pat9b_0569+
592316.Pat9b_1622(+)plastid
592316.Pat9b_0494+
592316.Pat9b_1999+
592316.Pat9b_3596+
592316.Pat9b_0237+
592316.Pat9b_0352(+)
592316.Pat9b_0353(+)
592316.Pat9b_2871(+)
592316.Pat9b_0746(+)
592316.Pat9b_2911(+)
592316.Pat9b_0823(+)
592316.Pat9b_0633(+)
592316.Pat9b_2468(+)
592316.Pat9b_1666(+)
592316.Pat9b_3404(+)
592316.Pat9b_0774(+)
592316.Pat9b_3229(+)
592316.Pat9b_2315(+)
592316.Pat9b_0534(+)
592316.Pat9b_0533(+)
592316.Pat9b_1807(+)
592316.Pat9b_3139(+)
592316.Pat9b_0228(+)
592316.Pat9b_1046(+)
592316.Pat9b_0327(+)
592316.Pat9b_1327(+)
592316.Pat9b_0811(+)
592316.Pat9b_1496(+)
592316.Pat9b_2407(+)
592316.Pat9b_2097(+)
592316.Pat9b_3306(+)
592316.Pat9b_0789(+)
592316.Pat9b_0028(+)
592316.Pat9b_1319(+)
592316.Pat9b_0808(+)
592316.Pat9b_0803(+)
592316.Pat9b_1264(+)
592316.Pat9b_1520(+)
592316.Pat9b_2062(+)
592316.Pat9b_2088(+)
592316.Pat9b_1866(+)
592316.Pat9b_3932(+)
592316.Pat9b_1901(+)
592316.Pat9b_0304(+)
592316.Pat9b_0878(+)
592316.Pat9b_2147(+)
592316.Pat9b_1053(+)
592316.Pat9b_1692(+)
592316.Pat9b_2347(+)
592316.Pat9b_2340(+)
592316.Pat9b_1874(+)
592316.Pat9b_3107(+)
592316.Pat9b_0276(+)
592316.Pat9b_0279(+)
592316.Pat9b_0477(+)
592316.Pat9b_1196(+)
592316.Pat9b_1205(+)
592316.Pat9b_1201(+)
592316.Pat9b_1424(+)
592316.Pat9b_1513(+)
592316.Pat9b_0483(+)
592316.Pat9b_2510(+)
592316.Pat9b_2517(+)
592316.Pat9b_3770(+)
592316.Pat9b_0265(+)
592316.Pat9b_0269+
592316.Pat9b_3003(+)
592316.Pat9b_1995(+)
592316.Pat9b_1992(+)
592316.Pat9b_0073(+)
592316.Pat9b_0104(+)
592316.Pat9b_0927(+)
592316.Pat9b_0855(+)
592316.Pat9b_1507(+)
592316.Pat9b_2637(+)
592316.Pat9b_2186(+)
592316.Pat9b_2563(+)
592316.Pat9b_2290(+)
592316.Pat9b_3666(+)
592316.Pat9b_0930(+)
592316.Pat9b_1532(+)
592316.Pat9b_3978(+)
592316.Pat9b_1719(+)
592316.Pat9b_2193(+)
592316.Pat9b_3579(+)
592316.Pat9b_0286(+)
592316.Pat9b_3022(+)
592316.Pat9b_0448(+)
592316.Pat9b_0056(+)
592316.Pat9b_3465(+)
592316.Pat9b_1235(+)
592316.Pat9b_0942(+)
592316.Pat9b_1522(+)
592316.Pat9b_3968(+)
592316.Pat9b_1148(+)
592316.Pat9b_0611(+)
592316.Pat9b_0619(+)
592316.Pat9b_2541(+)
592316.Pat9b_2546(+)
592316.Pat9b_3636(+)
592316.Pat9b_0433(+)
592316.Pat9b_0044(+)
592316.Pat9b_1752(+)
592316.Pat9b_0667(+)
592316.Pat9b_0953(+)
592316.Pat9b_1394(+)
592316.Pat9b_3955(+)
592316.Pat9b_1779(+)
592316.Pat9b_2605(+)
592316.Pat9b_2419(+)
592316.Pat9b_1559(+)
592316.Pat9b_0601(+)
592316.Pat9b_2156(+)
592316.Pat9b_3559(+)
592316.Pat9b_2557(+)
592316.Pat9b_1758(+)
592316.Pat9b_2392(+)
592316.Pat9b_3731(+)
592316.Pat9b_3730(+)
592316.Pat9b_1401(+)
592316.Pat9b_1958(+)
592316.Pat9b_3049(+)
592316.Pat9b_3601(+)
592316.Pat9b_1174(+)
592316.Pat9b_2674(+)
592316.Pat9b_0149(+)
592316.Pat9b_3170(+)
592316.Pat9b_0892(+)
592316.Pat9b_2491(+)
592316.Pat9b_1610(+)
592316.Pat9b_1615(+)
592316.Pat9b_1948(+)
592316.Pat9b_0417(+)
592316.Pat9b_3059(+)
592316.Pat9b_3617(+)
592316.Pat9b_0392(+)
592316.Pat9b_0081(+)
592316.Pat9b_1371(+)
592316.Pat9b_0935(+)
592316.Pat9b_0880(+)
592316.Pat9b_2487(+)
592316.Pat9b_2481(+)
592316.Pat9b_0977(+)
592316.Pat9b_0849(+)not used
592316.Pat9b_1624(+)
592316.Pat9b_2997(+)
592316.Pat9b_3539(+)
592316.Pat9b_2229(+)
592316.Pat9b_3127(+)
592316.Pat9b_1976(+)
592316.Pat9b_1971(+)
592316.Pat9b_2759(+)
592316.Pat9b_2924(+)
592316.Pat9b_1364(+)
592316.Pat9b_0153(+)
592316.Pat9b_2729(+)
592316.Pat9b_3857(+)
592316.Pat9b_3858(+)
592316.Pat9b_2038(+)
592316.Pat9b_2037(+)
592316.Pat9b_2827(+)
592316.Pat9b_3279(+)
592316.Pat9b_3675(+)not used
592316.Pat9b_3183(+)
592316.Pat9b_3185(+)
592316.Pat9b_2574(+)
592316.Pat9b_0506(+)
592316.Pat9b_3800(+)
592316.Pat9b_0215(+)
592316.Pat9b_0378(+)
592316.Pat9b_2936(+)
592316.Pat9b_0192(+)
592316.Pat9b_0195(+)
592316.Pat9b_0999(+)
592316.Pat9b_2738(+)
592316.Pat9b_1135(+)
592316.Pat9b_1139(+)
592316.Pat9b_2592(+)
592316.Pat9b_3861(+)
592316.Pat9b_2020(+)
592316.Pat9b_3466(+)
592316.Pat9b_3464(+)
592316.Pat9b_3921(+)
592316.Pat9b_1829(+)
592316.Pat9b_1823(+)
592316.Pat9b_3080(+)
592316.Pat9b_2549(+)
592316.Pat9b_0341(+)
592316.Pat9b_3801(+)
592316.Pat9b_2854(+)
592316.Pat9b_2908(+)
592316.Pat9b_1345(+)
592316.Pat9b_0837(+)
592316.Pat9b_3870(+)
592316.Pat9b_2696(+)
592316.Pat9b_3500(+)
592316.Pat9b_2409(+)not used
592316.Pat9b_1909(+)
592316.Pat9b_3896(+)
592316.Pat9b_3988(+)
592316.Pat9b_3453(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 0.3 (3/10 KEGG proteins)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================