Effective results for Methylocystis sp. ATCC 49242 (eggnog40)

Summary

Number of putative secreted proteins: 333
- Predicted by T4SEpre: 97
- Predicted by EffectiveELD: 38 eukaryotic-like domains, contained in 255 proteins (77 high, 178 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
622637.Met49242DRAFT_4408+(PF13276) PF13683mitochondrial
622637.Met49242DRAFT_4502+(PF13276) PF13683mitochondrial
622637.Met49242DRAFT_1515(PF13276) PF13683mitochondrial
622637.Met49242DRAFT_0116+(PF02012)ER
622637.Met49242DRAFT_3000(PF13276) PF13683mitochondrial
622637.Met49242DRAFT_4166(PF13276) PF13683mitochondrial
622637.Met49242DRAFT_2223(PF13276) PF13683mitochondrial
622637.Met49242DRAFT_4525(PF13276) PF13683mitochondrial; (mitochondrial)
622637.Met49242DRAFT_1768(PF13358)(mitochondrial)
622637.Met49242DRAFT_3925(PF01695)ER
622637.Met49242DRAFT_3682+ER
622637.Met49242DRAFT_4243+mitochondrial; (mitochondrial)
622637.Met49242DRAFT_4060(PF01609)ER
622637.Met49242DRAFT_3464(PF06480)ER
622637.Met49242DRAFT_2898+ER
622637.Met49242DRAFT_0962(PF13358)(mitochondrial)
622637.Met49242DRAFT_1212(PF13539)ER
622637.Met49242DRAFT_2321+ER
622637.Met49242DRAFT_2438+(ER); (mitochondrial)
622637.Met49242DRAFT_4275(PF06480)ER
622637.Met49242DRAFT_0107+ER
622637.Met49242DRAFT_0973+ER; (ER)
622637.Met49242DRAFT_3110(PF00589)(mitochondrial)
622637.Met49242DRAFT_3067(PF00589)mitochondrial; (mitochondrial)
622637.Met49242DRAFT_4139+ER
622637.Met49242DRAFT_3800PF01527(mitochondrial)
622637.Met49242DRAFT_3254(PF13358)(mitochondrial)
622637.Met49242DRAFT_1436(PF06472)ER
622637.Met49242DRAFT_0638+ER
622637.Met49242DRAFT_1881+ER
622637.Met49242DRAFT_1258(PF00589)(mitochondrial)
622637.Met49242DRAFT_1380+(mitochondrial)
622637.Met49242DRAFT_1899(PF00589)(mitochondrial); mitochondrial
622637.Met49242DRAFT_3631(PF02195)(mitochondrial)
622637.Met49242DRAFT_4549(PF06480)ER
622637.Met49242DRAFT_2879PF01527(mitochondrial)
622637.Met49242DRAFT_0423(PF05990)ER
622637.Met49242DRAFT_0049+ER
622637.Met49242DRAFT_0714+ER
622637.Met49242DRAFT_2736(PF05990)ER
622637.Met49242DRAFT_0645PF01527(mitochondrial)
622637.Met49242DRAFT_0706+ER
622637.Met49242DRAFT_0899(PF04577)mitochondrial
622637.Met49242DRAFT_0760+ER
622637.Met49242DRAFT_2108PF01527(mitochondrial)
622637.Met49242DRAFT_3916+ER
622637.Met49242DRAFT_1611(PF05990)ER
622637.Met49242DRAFT_1109+ER
622637.Met49242DRAFT_1829(PF00036)ER
622637.Met49242DRAFT_3177+(mitochondrial)
622637.Met49242DRAFT_0081(PF10908)mitochondrial; (mitochondrial)
622637.Met49242DRAFT_4193(PF05406)mitochondrial
622637.Met49242DRAFT_3999PF01527(mitochondrial)
622637.Met49242DRAFT_0874+ER
622637.Met49242DRAFT_3975(PF00589)(mitochondrial)
622637.Met49242DRAFT_2829(PF05548)ER
622637.Met49242DRAFT_4214(PF02195)(mitochondrial)
622637.Met49242DRAFT_2901+ER
622637.Met49242DRAFT_3988(PF06480)ER
622637.Met49242DRAFT_1120+ER
622637.Met49242DRAFT_3965(PF13276) PF13683(plastid)
622637.Met49242DRAFT_1062+ER
622637.Met49242DRAFT_1806(PF13358)(mitochondrial)
622637.Met49242DRAFT_0364PF15336(mitochondrial)
622637.Met49242DRAFT_2686+mitochondrial
622637.Met49242DRAFT_3792(PF00589)(mitochondrial)
622637.Met49242DRAFT_3887(PF01695)ER; (ER)
622637.Met49242DRAFT_3165+ER
622637.Met49242DRAFT_4523+(mitochondrial); plastid
622637.Met49242DRAFT_3438(PF06480)ER
622637.Met49242DRAFT_1005+mitochondrial
622637.Met49242DRAFT_3332PF13683ER
622637.Met49242DRAFT_4005+(mitochondrial)
622637.Met49242DRAFT_4312(PF01695)ER
622637.Met49242DRAFT_1174(PF10908)mitochondrial
622637.Met49242DRAFT_3937(PF06472)(mitochondrial); (plastid)
622637.Met49242DRAFT_1943PF01527mitochondrial; (mitochondrial)
622637.Met49242DRAFT_3457PF01150ER; (ER)
622637.Met49242DRAFT_3219(PF00589)mitochondrial
622637.Met49242DRAFT_3131(PF01695)(ER)
622637.Met49242DRAFT_0006(PF01695)(ER)
622637.Met49242DRAFT_4245(PF13384)mitochondrial; not used
622637.Met49242DRAFT_3580(PF02195)(plastid)
622637.Met49242DRAFT_0590(PF01695)(ER)
622637.Met49242DRAFT_4596(PF01695)(ER)
622637.Met49242DRAFT_1517(PF01695)(ER)
622637.Met49242DRAFT_4282(PF13358)(plastid)
622637.Met49242DRAFT_3655(PF00589)(mitochondrial)
622637.Met49242DRAFT_3657(PF13358) PF00292
622637.Met49242DRAFT_4631(PF13384)mitochondrial; not used
622637.Met49242DRAFT_2715(PF00589)(plastid)
622637.Met49242DRAFT_3710PF05028(mitochondrial)
622637.Met49242DRAFT_2842(PF01695)(ER)
622637.Met49242DRAFT_4154+PF01527
622637.Met49242DRAFT_2878+(mitochondrial)
622637.Met49242DRAFT_0652(PF00589)(mitochondrial)
622637.Met49242DRAFT_3830(PF13384)mitochondrial; not used
622637.Met49242DRAFT_4177+(PF02195)
622637.Met49242DRAFT_2126+(plastid)
622637.Met49242DRAFT_3343(PF13358) PF00292
622637.Met49242DRAFT_4183(PF02195)(mitochondrial)
622637.Met49242DRAFT_1913(PF01209)(plastid)
622637.Met49242DRAFT_4297(PF03050)(mitochondrial)
622637.Met49242DRAFT_4575(PF13276) PF13683not used
622637.Met49242DRAFT_2565PF13481(plastid)
622637.Met49242DRAFT_0467+(mitochondrial)
622637.Met49242DRAFT_2227(PF01695)(ER)
622637.Met49242DRAFT_2824(PF01695)(mitochondrial)
622637.Met49242DRAFT_1008(PF00589)(plastid)
622637.Met49242DRAFT_3330+PF01527
622637.Met49242DRAFT_4003PF01231(plastid)
622637.Met49242DRAFT_3842(PF02012)(ER)
622637.Met49242DRAFT_4075(PF01609)
622637.Met49242DRAFT_2946+
622637.Met49242DRAFT_2893(PF00589)
622637.Met49242DRAFT_1767PF00292
622637.Met49242DRAFT_0828(PF00847)
622637.Met49242DRAFT_0825+
622637.Met49242DRAFT_3562+
622637.Met49242DRAFT_3859PF13683
622637.Met49242DRAFT_2400(PF00589)
622637.Met49242DRAFT_3681(PF01609)
622637.Met49242DRAFT_1570(PF04998)
622637.Met49242DRAFT_0003(PF00589)
622637.Met49242DRAFT_3594(PF05406)
622637.Met49242DRAFT_4485PF01527
622637.Met49242DRAFT_4487(PF03050)
622637.Met49242DRAFT_3599(PF02195)
622637.Met49242DRAFT_4483(PF00589)
622637.Met49242DRAFT_2522+
622637.Met49242DRAFT_4248(PF01209)
622637.Met49242DRAFT_1220(PF02371)
622637.Met49242DRAFT_3469PF13481
622637.Met49242DRAFT_2880(PF13276)
622637.Met49242DRAFT_0766+
622637.Met49242DRAFT_0963PF00292
622637.Met49242DRAFT_1217(PF02371)
622637.Met49242DRAFT_1962(PF01609)
622637.Met49242DRAFT_1219(PF01609)
622637.Met49242DRAFT_3129(PF00589)
622637.Met49242DRAFT_2188+
622637.Met49242DRAFT_2507(PF13539)
622637.Met49242DRAFT_3275PF13683
622637.Met49242DRAFT_4477PF01527not used
622637.Met49242DRAFT_4293PF01527
622637.Met49242DRAFT_1695(PF00589)
622637.Met49242DRAFT_4295(PF03050)
622637.Met49242DRAFT_4614PF01527
622637.Met49242DRAFT_4612PF01527
622637.Met49242DRAFT_4618(PF02371)
622637.Met49242DRAFT_3473(PF00589)
622637.Met49242DRAFT_4051(PF02371)
622637.Met49242DRAFT_4050(PF13358)
622637.Met49242DRAFT_1747(PF13358)
622637.Met49242DRAFT_1749PF13683not used
622637.Met49242DRAFT_0592+not used
622637.Met49242DRAFT_0593+
622637.Met49242DRAFT_1222+
622637.Met49242DRAFT_2198PF13481
622637.Met49242DRAFT_1519(PF01609)
622637.Met49242DRAFT_1514PF01527
622637.Met49242DRAFT_1516(PF02371)
622637.Met49242DRAFT_4466(PF01695)
622637.Met49242DRAFT_4280(PF02195)
622637.Met49242DRAFT_4048(PF02371)
622637.Met49242DRAFT_1348PF00292
622637.Met49242DRAFT_1239+
622637.Met49242DRAFT_2299+
622637.Met49242DRAFT_2298(PF01442)
622637.Met49242DRAFT_3654+
622637.Met49242DRAFT_1501+
622637.Met49242DRAFT_4457PF01527
622637.Met49242DRAFT_3253PF00292
622637.Met49242DRAFT_0120+
622637.Met49242DRAFT_0127+
622637.Met49242DRAFT_4630(PF13358)not used
622637.Met49242DRAFT_4637PF13481not used
622637.Met49242DRAFT_4601PF13683not used
622637.Met49242DRAFT_0631+
622637.Met49242DRAFT_3823+
622637.Met49242DRAFT_1247(PF13358)
622637.Met49242DRAFT_3816(PF04519)
622637.Met49242DRAFT_1884+
622637.Met49242DRAFT_2066(PF01609)
622637.Met49242DRAFT_2067(PF02371)
622637.Met49242DRAFT_2068(PF00589)
622637.Met49242DRAFT_4446+not used
622637.Met49242DRAFT_4620PF13481
622637.Met49242DRAFT_4621PF13481
622637.Met49242DRAFT_2844(PF01609)
622637.Met49242DRAFT_4157(PF13358)
622637.Met49242DRAFT_4153(PF13358)
622637.Met49242DRAFT_0625(PF01609)
622637.Met49242DRAFT_0627(PF03050)
622637.Met49242DRAFT_1095(PF14022)
622637.Met49242DRAFT_1478+
622637.Met49242DRAFT_3265+
622637.Met49242DRAFT_3082+
622637.Met49242DRAFT_3380PF13481
622637.Met49242DRAFT_2724+
622637.Met49242DRAFT_2653(PF01609)
622637.Met49242DRAFT_3708PF04406
622637.Met49242DRAFT_4439(PF13276)
622637.Met49242DRAFT_4548PF13683not used
622637.Met49242DRAFT_4380(PF01695)not used
622637.Met49242DRAFT_4367(PF00589)
622637.Met49242DRAFT_4366(PF00589)
622637.Met49242DRAFT_4063+
622637.Met49242DRAFT_4169(PF03050)
622637.Met49242DRAFT_4163PF01527
622637.Met49242DRAFT_4167PF01527
622637.Met49242DRAFT_4165PF01527
622637.Met49242DRAFT_4164(PF13276)
622637.Met49242DRAFT_3834(PF01609)
622637.Met49242DRAFT_3831(PF03050)
622637.Met49242DRAFT_1843+
622637.Met49242DRAFT_2399+
622637.Met49242DRAFT_1289(PF04577)
622637.Met49242DRAFT_2268+
622637.Met49242DRAFT_1286+
622637.Met49242DRAFT_2485(PF02195)
622637.Met49242DRAFT_3968PF01527
622637.Met49242DRAFT_3288+
622637.Met49242DRAFT_3519PF13481
622637.Met49242DRAFT_3512(PF00589)
622637.Met49242DRAFT_4552(PF01695)not used
622637.Met49242DRAFT_4551(PF01695)
622637.Met49242DRAFT_4557(PF13276)
622637.Met49242DRAFT_3603(PF00589)
622637.Met49242DRAFT_4558PF01527
622637.Met49242DRAFT_3356(PF00589)
622637.Met49242DRAFT_4394(PF04577)
622637.Met49242DRAFT_2728+
622637.Met49242DRAFT_4174(PF00589)
622637.Met49242DRAFT_4175(PF14022)
622637.Met49242DRAFT_4176+
622637.Met49242DRAFT_4170(PF01695)
622637.Met49242DRAFT_3709PF09239
622637.Met49242DRAFT_1276(PF02371)
622637.Met49242DRAFT_1074PF08557
622637.Met49242DRAFT_0090+
622637.Met49242DRAFT_2105(PF03050)
622637.Met49242DRAFT_4566PF13683
622637.Met49242DRAFT_4564PF01527not used
622637.Met49242DRAFT_3340(PF01695)
622637.Met49242DRAFT_4342(PF02371)
622637.Met49242DRAFT_4340PF01527not used
622637.Met49242DRAFT_4185(PF05406)
622637.Met49242DRAFT_4186(PF00589)not used
622637.Met49242DRAFT_0405(PF01609)
622637.Met49242DRAFT_2999PF01527
622637.Met49242DRAFT_4607PF13683not used
622637.Met49242DRAFT_2027+
622637.Met49242DRAFT_3197(PF16565)
622637.Met49242DRAFT_3196PF01527
622637.Met49242DRAFT_3194(PF03050)
622637.Met49242DRAFT_4409PF01527
622637.Met49242DRAFT_4579(PF03050)not used
622637.Met49242DRAFT_4572(PF00589)
622637.Met49242DRAFT_2805(PF01609)
622637.Met49242DRAFT_2803(PF04998)
622637.Met49242DRAFT_3998(PF13276)
622637.Met49242DRAFT_0872(PF00589)
622637.Met49242DRAFT_3970(PF03050)
622637.Met49242DRAFT_3976(PF00589)
622637.Met49242DRAFT_3250+
622637.Met49242DRAFT_2569(PF00589)
622637.Met49242DRAFT_3182(PF13384)not used
622637.Met49242DRAFT_3748PF01527
622637.Met49242DRAFT_3742(PF13358)
622637.Met49242DRAFT_3743(PF13358)
622637.Met49242DRAFT_3740+
622637.Met49242DRAFT_1457+
622637.Met49242DRAFT_2761+
622637.Met49242DRAFT_4325(PF02195)
622637.Met49242DRAFT_4321(PF03050)
622637.Met49242DRAFT_4329PF13683
622637.Met49242DRAFT_4219(PF13539)
622637.Met49242DRAFT_1632(PF00589)
622637.Met49242DRAFT_0461+
622637.Met49242DRAFT_0990(PF13875)
622637.Met49242DRAFT_1361+
622637.Met49242DRAFT_3966PF01527
622637.Met49242DRAFT_2224PF01527
622637.Met49242DRAFT_1805PF00292
622637.Met49242DRAFT_3063PF13481
622637.Met49242DRAFT_3795(PF13384)
622637.Met49242DRAFT_4518+not used
622637.Met49242DRAFT_4512(PF13358)
622637.Met49242DRAFT_4511(PF03050)
622637.Met49242DRAFT_0686+
622637.Met49242DRAFT_0684+
622637.Met49242DRAFT_2825PF00292
622637.Met49242DRAFT_3422(PF01609)not used
622637.Met49242DRAFT_3421(PF01695)
622637.Met49242DRAFT_3420(PF02195)
622637.Met49242DRAFT_3221(PF00589)
622637.Met49242DRAFT_3220(PF00589)
622637.Met49242DRAFT_0044+
622637.Met49242DRAFT_3881(PF06472)
622637.Met49242DRAFT_1445+
622637.Met49242DRAFT_1320(PF01209)
622637.Met49242DRAFT_2214(PF04519)
622637.Met49242DRAFT_0213(PF01609)
622637.Met49242DRAFT_3764(PF01209)
622637.Met49242DRAFT_4526PF01527
622637.Met49242DRAFT_4235PF01527
622637.Met49242DRAFT_1696(PF04519)
622637.Met49242DRAFT_4302(PF02371)not used
622637.Met49242DRAFT_4300PF13683
622637.Met49242DRAFT_3940(PF06472)
622637.Met49242DRAFT_3942(PF13276)
622637.Met49242DRAFT_3943PF01527
622637.Met49242DRAFT_1310+
622637.Met49242DRAFT_2206(PF04519)
622637.Met49242DRAFT_1952(PF00589)
622637.Met49242DRAFT_4002PF01231
622637.Met49242DRAFT_2971(PF02371)
622637.Met49242DRAFT_4318(PF02371)
622637.Met49242DRAFT_4319PF01527
622637.Met49242DRAFT_0151(PF01609)
622637.Met49242DRAFT_1015PF01527
622637.Met49242DRAFT_3849+
622637.Met49242DRAFT_3841(PF00589)
622637.Met49242DRAFT_1940(PF13384)not used
622637.Met49242DRAFT_2098(PF04577)
622637.Met49242DRAFT_2095+
622637.Met49242DRAFT_3145(PF01609)
622637.Met49242DRAFT_0302(PF02195)
622637.Met49242DRAFT_1540(PF01609)
622637.Met49242DRAFT_3214(PF02195)
622637.Met49242DRAFT_4493(PF13358)not used
622637.Met49242DRAFT_4254+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 2.5 (25/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================