Effective results for Sphingobium sp. SYK-6 (eggnog40)

Summary

Number of putative secreted proteins: 168
- Predicted by T4SEpre: 42
- Predicted by EffectiveELD: 19 eukaryotic-like domains, contained in 130 proteins (53 high, 77 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
627192.SLG_12660(PF12680)ER
627192.SLG_19100(PF12680)ER
627192.SLG_28140PF13577(ER)
627192.SLG_18190(PF05960)ER
627192.SLG_04380+ER
627192.SLG_12120PF13577ER
627192.SLG_13550(PF05960)ER
627192.SLG_15250PF13577ER
627192.SLG_02610+(mitochondrial)
627192.SLG_28840(PF04909)ER; (ER)
627192.SLG_28660PF11578ER
627192.SLG_15280PF13577mitochondrial
627192.SLG_11840(PF09825)(mitochondrial)
627192.SLG_11660+mitochondrial; (mitochondrial)
627192.SLG_28640+ER
627192.SLG_26310PF13577ER
627192.SLG_31230PF13577ER
627192.SLG_35220(PF04862)ER
627192.SLG_32340(PF05960)ER
627192.SLG_04310+(mitochondrial)
627192.SLG_20870+ER
627192.SLG_18820+mitochondrial
627192.SLG_12230PF13577ER
627192.SLG_32180PF13577ER
627192.SLG_16840PF05735(ER)
627192.SLG_36710PF13577ER; (mitochondrial)
627192.SLG_28120PF13577ER
627192.SLG_18670(PF12680)ER
627192.SLG_08220(PF05960)ER
627192.SLG_36720PF13577ER
627192.SLG_01820+mitochondrial
627192.SLG_12250PF13577ER
627192.SLG_27320+mitochondrial; (mitochondrial)
627192.SLG_32720+ER
627192.SLG_36730PF13577ER
627192.SLG_37350+(mitochondrial)
627192.SLG_37600+ER
627192.SLG_12240PF13577ER
627192.SLG_33510(PF05960)ER
627192.SLG_30740+ER
627192.SLG_18790(PF12680)ER
627192.SLG_31290PF13577ER
627192.SLG_23070(PF06455)ER
627192.SLG_25890(PF05960)ER
627192.SLG_34470(PF05960)(ER)
627192.SLG_12670(PF12680)ER
627192.SLG_15000(PF04800)(mitochondrial)
627192.SLG_28110PF13577(mitochondrial)
627192.SLG_20100+PF13577
627192.SLG_07720(PF02900)(plastid)
627192.SLG_18560PF13577(mitochondrial)
627192.SLG_21800+(mitochondrial)
627192.SLG_27990PF13577(ER)
627192.SLG_12100PF13577(plastid)
627192.SLG_09410PF13577
627192.SLG_36350+
627192.SLG_27970PF03055
627192.SLG_06620PF13577
627192.SLG_23260(PF12680)
627192.SLG_36670+
627192.SLG_18420PF13577
627192.SLG_36960+
627192.SLG_30010(PF12680)
627192.SLG_13520+
627192.SLG_09890(PF12680)
627192.SLG_07030(PF13281)
627192.SLG_31300(PF04909)
627192.SLG_19550+
627192.SLG_08670PF16865
627192.SLG_21700+
627192.SLG_35940(PF04909)
627192.SLG_19020(PF04909)
627192.SLG_07900(PF12831)
627192.SLG_03370(PF02900)
627192.SLG_06470(PF04909)
627192.SLG_23760(PF13759)
627192.SLG_09450(PF12680)
627192.SLG_23160(PF12680)
627192.SLG_19030(PF02900)
627192.SLG_27930PF13577
627192.SLG_38060PF13577
627192.SLG_22360+
627192.SLG_12570(PF04909)
627192.SLG_34850(PF04909)
627192.SLG_04620+
627192.SLG_10950(PF05189)
627192.SLG_21030(PF05960)
627192.SLG_07040+
627192.SLG_34960PF13577
627192.SLG_27840(PF12680)
627192.SLG_09440PF03055
627192.SLG_09530(PF12680)
627192.SLG_18930(PF04909)
627192.SLG_12500(PF02900)
627192.SLG_27250PF11578
627192.SLG_07850(PF04909)
627192.SLG_31190+
627192.SLG_38040PF13577
627192.SLG_22340+
627192.SLG_04480(PF12680)
627192.SLG_17610(PF12680)
627192.SLG_27240PF11578
627192.SLG_11860(PF13759)
627192.SLG_26440+
627192.SLG_23350+
627192.SLG_15610(PF12831)
627192.SLG_27900(PF12680)
627192.SLG_27870(PF12680)
627192.SLG_12520(PF04909)
627192.SLG_13340+
627192.SLG_21820(PF13392)
627192.SLG_07890(PF12831)
627192.SLG_35080(PF04909)
627192.SLG_09360PF11578
627192.SLG_09490(PF12680)
627192.SLG_12680(PF04909)
627192.SLG_22030+
627192.SLG_37540PF03055
627192.SLG_26330(PF10703)
627192.SLG_10680+
627192.SLG_20090(PF12680)
627192.SLG_07880(PF12831)
627192.SLG_15360(PF04909)
627192.SLG_09370PF11578
627192.SLG_27850PF11578
627192.SLG_12780PF13577
627192.SLG_37520(PF02900)
627192.SLG_12810(PF04909)
627192.SLG_17570PF13577
627192.SLG_11300PF03055
627192.SLG_06630(PF04909)
627192.SLG_31560+
627192.SLG_35000(PF04909)
627192.SLG_33520PF13577
627192.SLG_36640PF03055
627192.SLG_28100(PF04909)
627192.SLG_07750(PF04909)
627192.SLG_18650PF13577
627192.SLG_12650PF13577
627192.SLG_32480+
627192.SLG_27830(PF12680)
627192.SLG_19130(PF04909)
627192.SLG_01800(PF02900)
627192.SLG_26940+
627192.SLG_21640(PF13392)
627192.SLG_07290PF11578
627192.SLG_03330(PF02900)
627192.SLG_27300PF03055
627192.SLG_02060+
627192.SLG_26760(PF04800)
627192.SLG_15440+
627192.SLG_26370(PF10703)
627192.SLG_27480(PF12831)
627192.SLG_12460PF13577
627192.SLG_27000+
627192.SLG_12860PF03055
627192.SLG_18740PF13577
627192.SLG_00500+
627192.SLG_31240PF13577
627192.SLG_28570(PF04909)
627192.SLG_22040(PF13392)
627192.SLG_12580PF03055
627192.SLG_12850PF11578
627192.SLG_04940(PF12680)
627192.SLG_10160+
627192.SLG_05440(PF12680)
627192.SLG_07550(PF12831)
627192.SLG_09380(PF12680)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 1.2 (12/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================