Metamenu

Effective results for Caldicellulosiruptor hydrothermalis 108 (eggnog40)

Summary

Number of putative secreted proteins: 59
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 59 proteins (33 high, 26 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
632292.Calhy_0292PF05598 (PF01609)(mitochondrial)
632292.Calhy_0039PF05598 (PF01609)(mitochondrial)
632292.Calhy_0011PF05598 (PF01609)(mitochondrial)
632292.Calhy_0482PF05598 (PF01609)(mitochondrial)
632292.Calhy_0802PF05598 (PF01609)(mitochondrial)
632292.Calhy_1953PF05598 (PF01609)(mitochondrial)
632292.Calhy_0147PF05598 (PF01609)(mitochondrial)
632292.Calhy_1929PF05598 (PF01609)(mitochondrial)
632292.Calhy_2536PF05598 (PF01609)(mitochondrial)
632292.Calhy_1988(PF04041)(mitochondrial); mitochondrial
632292.Calhy_2415(PF02223)(mitochondrial)
632292.Calhy_2118(PF04041)(mitochondrial)
632292.Calhy_2272(PF04041)(mitochondrial)
632292.Calhy_1862PF05598 (PF01609)
632292.Calhy_2148PF05598 (PF01609)
632292.Calhy_2141PF05598 (PF01609)
632292.Calhy_0622PF05598 (PF01609)
632292.Calhy_0837(PF16661)(plastid)
632292.Calhy_0139PF05598 (PF01609)
632292.Calhy_1949PF05598 (PF01609)
632292.Calhy_0797PF05598 (PF01609)
632292.Calhy_2338PF05598 (PF01609)
632292.Calhy_2209(PF06165) (PF17167)
632292.Calhy_2208(PF06165) (PF17167)
632292.Calhy_1565PF05598 (PF01609)
632292.Calhy_1790PF05598 (PF01609)
632292.Calhy_0680PF05598 (PF01609)
632292.Calhy_0178PF05598 (PF01609)
632292.Calhy_2482PF05598 (PF01609)
632292.Calhy_0166PF05598 (PF01609)
632292.Calhy_1358PF05598 (PF01609)
632292.Calhy_2247(PF03636) (PF03632)
632292.Calhy_2244PF05598 (PF01609)
632292.Calhy_2252(PF03636) (PF03632)
632292.Calhy_0085(PF06165) (PF17167)
632292.Calhy_1630PF05598 (PF01609)
632292.Calhy_1709PF05598 (PF01609)
632292.Calhy_0070(PF03636) (PF03632)
632292.Calhy_0071(PF03636) (PF03632)
632292.Calhy_2299PF05598 (PF01609)
632292.Calhy_0044PF05598 (PF01609)
632292.Calhy_0702PF05598 (PF01609)
632292.Calhy_2157(PF02223)
632292.Calhy_1856(PF13394)
632292.Calhy_1693(PF13394)
632292.Calhy_2312(PF13394)
632292.Calhy_2137(PF13394)
632292.Calhy_2053PF08784not used
632292.Calhy_2431(PF13394)
632292.Calhy_0571(PF13394)
632292.Calhy_0231PF05598
632292.Calhy_2271(PF04041)
632292.Calhy_0440PF11443
632292.Calhy_2414(PF02223)
632292.Calhy_1449(PF16661)
632292.Calhy_2532(PF13394)
632292.Calhy_0894(PF09419)
632292.Calhy_1715(PF01094)
632292.Calhy_0280(PF04041)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================