Effective results for Komagataeibacter medellinensis NBRC 3288 (eggnog40)

Summary

Number of putative secreted proteins: 53
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 53 proteins (4 high, 49 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
634177.GLX_16180(PF03022)mitochondrial
634177.GLX_26270(PF03022)mitochondrial
634177.GLX_27650(PF03022)(ER)
634177.GLX_19090(PF03901)(mitochondrial)
634177.GLX_05290(PF02112)(ER)
634177.GLX_07870(PF03552)ER
634177.GLX_00580(PF01609) (PF05598)
634177.GLX_18610(PF01609) (PF05598)
634177.GLX_17080(PF01609) (PF05598)
634177.GLX_05180(PF01156)plastid
634177.GLX_05040(PF01609) (PF05598)
634177.GLX_23880(PF01156)(ER)
634177.GLX_18660(PF01609) (PF05598)
634177.GLX_05200(PF01156)(mitochondrial)
634177.GLX_23490(PF01609) (PF05598)
634177.GLX_00620(PF01609) (PF05598)
634177.GLX_01910(PF01609) (PF05598)
634177.GLX_12300(PF01609) (PF05598)
634177.GLX_11920(PF01609) (PF05598)
634177.GLX_27440(PF01609) (PF05598)
634177.GLX_17040(PF01609) (PF05598)
634177.GLX_18530(PF01609) (PF05598)
634177.GLX_02280(PF01609) (PF05598)
634177.GLX_03830(PF01156)
634177.GLX_13860(PF13429)
634177.GLX_18500(PF05598)
634177.GLX_02050(PF01609)
634177.GLX_27560(PF13429)
634177.GLX_18510(PF01609)
634177.GLX_14700(PF05598)
634177.GLX_18670PF04488
634177.GLX_02330(PF01609)
634177.GLX_18650(PF01609)
634177.GLX_18830(PF01609)
634177.GLX_11290(PF03022)
634177.GLX_18730(PF05598)
634177.GLX_25310(PF12513)
634177.GLX_03790(PF01156)
634177.GLX_02350(PF05598)
634177.GLX_18740(PF01609)
634177.GLX_04030PF04488
634177.GLX_01240(PF01609)
634177.GLX_25060(PF03552)
634177.GLX_18750(PF05598)
634177.GLX_09290(PF01156)
634177.GLX_27490(PF03552)
634177.GLX_18410PF04488
634177.GLX_08550(PF03552)
634177.GLX_02090(PF05598)
634177.GLX_18430(PF01609)
634177.GLX_01430(PF01609)
634177.GLX_18420PF04488
634177.GLX_23120(PF01609)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================