Metamenu

Effective results for Erwinia billingiae Eb661 (eggnog40)

Summary

Number of putative secreted proteins: 563
- Predicted by EffectiveT3: 196 (high confidence), 294 (low confidence)
- Predicted by EffectiveCCBD: 12 within, 14 before, 38 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 25 proteins (0 high, 25 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type III)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
634500.EbC_15540+(mitochondrial)
634500.EbC_08380+mitochondrial
634500.EbC_09720(PF00328)ER
634500.EbC_34640(>)ER
634500.EbC_10250(>)ER
634500.EbC_03710(>)ER
634500.EbC_20610(>)ER
634500.EbC_40560(>)ER
634500.EbC_16160(>)(ER)
634500.EbC_22550(+)(>)ER
634500.EbC_45460+(mitochondrial)
634500.EbC_24700(>)ER
634500.EbC_15550(PF00328)ER
634500.EbC_17960(PF13332)(mitochondrial)
634500.EbC_03590(>)(mitochondrial)
634500.EbC_16040+ER
634500.EbC_22130+(ER); (mitochondrial)
634500.EbC_36130(>)ER
634500.EbC_05140(>)mitochondrial
634500.EbC_38930+ER
634500.EbC_43400(>)ER
634500.EbC_20460+ER
634500.EbC_27130(>)ER
634500.EbC_09440+(mitochondrial)
634500.EbC_42380(>)ER
634500.EbC_44020(PF03552)ER
634500.EbC_00620+(mitochondrial)
634500.EbC_37630(>)ER
634500.EbC_15600+(mitochondrial)
634500.EbC_43920(PF03552)(mitochondrial)
634500.EbC_24460+ER
634500.EbC_07030(>)ER
634500.EbC_04760+(ER); (mitochondrial)
634500.EbC_01110(PF00959)ER
634500.EbC_41930+ER
634500.EbC_44890+(<)
634500.EbC_23910+(<)not used
634500.EbC_22190(+)ER
634500.EbC_38600(+)(mitochondrial)
634500.EbC_45680+(plastid)
634500.EbC_16410(+)(mitochondrial)
634500.EbC_39030(+)(mitochondrial)
634500.EbC_26380+plastid
634500.EbC_23240(+)ER
634500.EbC_29730(+)(ER)
634500.EbC_37220+(PF13332)
634500.EbC_14490(+)mitochondrial
634500.EbC_20110+(plastid)
634500.EbC_30360(+)(mitochondrial); (plastid)
634500.EbC_29650+plastid
634500.EbC_36320(+)mitochondrial
634500.EbC_32310++
634500.EbC_38980(>)(mitochondrial)
634500.EbC_16450+(plastid)
634500.EbC_23520+(>)
634500.EbC_41690+(>)
634500.EbC_43770+(plastid)
634500.EbC_17950+(PF13332)
634500.EbC_12010(+)ER
634500.EbC_07840(+)(mitochondrial)
634500.EbC_36000+(plastid)
634500.EbC_15570+(<)
634500.EbC_00540(+)ER
634500.EbC_24820+plastid
634500.EbC_23090(+)ER
634500.EbC_31190(+)(ER)
634500.EbC_21000(+)(mitochondrial)
634500.EbC_38050+(mitochondrial); not used
634500.EbC_26610+plastid
634500.EbC_03300(PF03437)(mitochondrial)
634500.EbC_26400+(ER)
634500.EbC_35550+(mitochondrial)
634500.EbC_41400+(ER)
634500.EbC_01860+(mitochondrial)
634500.EbC_20810+(plastid)
634500.EbC_21780(PF13332)(ER)
634500.EbC_39430(+)(mitochondrial)
634500.EbC_27350+ER; not used
634500.EbC_16610(+)(mitochondrial)
634500.EbC_10160(+)(mitochondrial)
634500.EbC_08860(+)(>)(plastid)
634500.EbC_39380(+)(ER)
634500.EbC_31900+(PF00959)
634500.EbC_37180(+)(mitochondrial); not used
634500.EbC_32660+
634500.EbC_45540+
634500.EbC_15660(+)(>)
634500.EbC_34520+
634500.EbC_42010(<)
634500.EbC_38440+
634500.EbC_14390(+)(ER)
634500.EbC_15060+
634500.EbC_14620+
634500.EbC_18060+
634500.EbC_07550+
634500.EbC_08490+
634500.EbC_14050+
634500.EbC_10750+
634500.EbC_21160+
634500.EbC_43450+
634500.EbC_06140+
634500.EbC_37200(<)
634500.EbC_44550+
634500.EbC_37990(<)
634500.EbC_22290+not used
634500.EbC_43500(+)plastid
634500.EbC_42310(+)(mitochondrial)
634500.EbC_08660+
634500.EbC_28850(+)(mitochondrial)
634500.EbC_04700(>)
634500.EbC_17800+
634500.EbC_03640+
634500.EbC_20910+
634500.EbC_20590+
634500.EbC_16960(+)(plastid)
634500.EbC_13450+
634500.EbC_31960+
634500.EbC_37340+
634500.EbC_26540+
634500.EbC_33860(>)
634500.EbC_40840+
634500.EbC_34450+
634500.EbC_11330+
634500.EbC_22600+
634500.EbC_14080+
634500.EbC_29540(+)(ER)
634500.EbC_24600+
634500.EbC_00270+
634500.EbC_21120+
634500.EbC_05620+
634500.EbC_20290+
634500.EbC_40180+
634500.EbC_31970(<)
634500.EbC_30150+
634500.EbC_10860+
634500.EbC_24950(+)(ER)
634500.EbC_27820+
634500.EbC_19010+
634500.EbC_19650+
634500.EbC_17030+
634500.EbC_33690(+)(PF16485)
634500.EbC_04540+
634500.EbC_35040(<)
634500.EbC_11780+
634500.EbC_15650+
634500.EbC_43530+
634500.EbC_24410+
634500.EbC_29430(+)plastid
634500.EbC_26940+
634500.EbC_00130+
634500.EbC_39560+
634500.EbC_37030+
634500.EbC_13650+
634500.EbC_35880(<)
634500.EbC_31790+
634500.EbC_17660+
634500.EbC_15640+
634500.EbC_34410(+)(plastid)
634500.EbC_08740+
634500.EbC_04020(PF09330)
634500.EbC_35320+
634500.EbC_01030+
634500.EbC_24880+
634500.EbC_10720+
634500.EbC_00030+
634500.EbC_30040(+)(plastid)
634500.EbC_41490(+)(>)
634500.EbC_44280(+)(plastid)
634500.EbC_29250(>)
634500.EbC_38220+
634500.EbC_16320(>)
634500.EbC_11810+
634500.EbC_35060+
634500.EbC_02000+
634500.EbC_04120+
634500.EbC_08680+
634500.EbC_05180(PF03437)
634500.EbC_41820+
634500.EbC_13520+
634500.EbC_18110+
634500.EbC_44070+
634500.EbC_38430(+)(plastid)
634500.EbC_11480+
634500.EbC_37870+
634500.EbC_32370+
634500.EbC_22350+
634500.EbC_16460+
634500.EbC_03560+
634500.EbC_23990(+)(mitochondrial)
634500.EbC_19040+
634500.EbC_15560+
634500.EbC_31080+
634500.EbC_34690(+)+
634500.EbC_09090+
634500.EbC_13480+
634500.EbC_21870(PF13332)
634500.EbC_36500+not used
634500.EbC_24990(+)(mitochondrial)
634500.EbC_25130+
634500.EbC_05880+
634500.EbC_42790+
634500.EbC_22880+not used
634500.EbC_30060+not used
634500.EbC_39550+
634500.EbC_06320+
634500.EbC_02660(+)(ER)
634500.EbC_06210(>)
634500.EbC_12310+
634500.EbC_41610+
634500.EbC_13750(PF09330)
634500.EbC_16120+
634500.EbC_22030+
634500.EbC_02990+
634500.EbC_11470+
634500.EbC_16270(PF04399)
634500.EbC_12800+
634500.EbC_23340(<)
634500.EbC_07630+
634500.EbC_23180(PF04399)
634500.EbC_34350+
634500.EbC_42570+
634500.EbC_04670+
634500.EbC_21840+
634500.EbC_05890+
634500.EbC_14250+
634500.EbC_43590+
634500.EbC_13980+
634500.EbC_33790+
634500.EbC_29040+
634500.EbC_33770+
634500.EbC_19550+
634500.EbC_01910(>)
634500.EbC_22370+
634500.EbC_08140+
634500.EbC_23150(+)plastid
634500.EbC_03880+
634500.EbC_11550+
634500.EbC_40030(<)
634500.EbC_06440+
634500.EbC_05330(PF09130)
634500.EbC_06010+
634500.EbC_38040(>)
634500.EbC_12060(>)
634500.EbC_37840(>)
634500.EbC_14500(PF14328)
634500.EbC_22560+
634500.EbC_11450+
634500.EbC_42170+
634500.EbC_00200+
634500.EbC_45720(+)(mitochondrial)
634500.EbC_13230+
634500.EbC_24810(+)(mitochondrial); not used
634500.EbC_34160+
634500.EbC_13700+
634500.EbC_37540+
634500.EbC_33170(<)
634500.EbC_44740(<)
634500.EbC_19150(+)(>)
634500.EbC_02830+
634500.EbC_42690+
634500.EbC_02490+
634500.EbC_30900+
634500.EbC_08520+
634500.EbC_08450+
634500.EbC_34140(>)
634500.EbC_28190(+)(plastid)
634500.EbC_02300+
634500.EbC_20230+
634500.EbC_21630(+)mitochondrial
634500.EbC_10970(PF00959)
634500.EbC_28300+
634500.EbC_39040+
634500.EbC_26530(+)(mitochondrial); not used
634500.EbC_16380+
634500.EbC_17010(PF00959)
634500.EbC_02820+
634500.EbC_19180(PF09130)
634500.EbC_18580+
634500.EbC_15930+
634500.EbC_45880(<)
634500.EbC_20950+
634500.EbC_26650+
634500.EbC_20550+
634500.EbC_39700+
634500.EbC_12850+
634500.EbC_45140+
634500.EbC_10890+
634500.EbC_45840(>)
634500.EbC_22330+
634500.EbC_08500+
634500.EbC_03660+
634500.EbC_38240(>)
634500.EbC_23440+
634500.EbC_03400+
634500.EbC_08470+
634500.EbC_31660(+)(mitochondrial)
634500.EbC_01050(PF05929)
634500.EbC_20760+
634500.EbC_30530(+)(plastid)
634500.EbC_10910(PF05929)
634500.EbC_40890+
634500.EbC_43260+
634500.EbC_37570(>)
634500.EbC_19340+
634500.EbC_03070+
634500.EbC_12990+
634500.EbC_32890+
634500.EbC_07230+
634500.EbC_14380+
634500.EbC_19830+
634500.EbC_04610+
634500.EbC_09800(>)
634500.EbC_24450+
634500.EbC_15420+
634500.EbC_31650(>)
634500.EbC_04470+
634500.EbC_26290+
634500.EbC_44540+
634500.EbC_38700+
634500.EbC_07970(+)
634500.EbC_16750(+)
634500.EbC_18930(+)
634500.EbC_16930(+)
634500.EbC_29970(+)
634500.EbC_16400(+)
634500.EbC_08810(+)
634500.EbC_00290(+)
634500.EbC_35210(+)
634500.EbC_45890(+)
634500.EbC_06290(+)
634500.EbC_05000(+)
634500.EbC_29100(+)
634500.EbC_20580(+)
634500.EbC_39480(+)
634500.EbC_10930(+)
634500.EbC_27570(+)
634500.EbC_05250(+)
634500.EbC_14150(+)
634500.EbC_27150(+)
634500.EbC_19250(+)
634500.EbC_18250(+)
634500.EbC_11320(+)
634500.EbC_45440(+)
634500.EbC_27160(+)
634500.EbC_11030(+)
634500.EbC_08710(+)
634500.EbC_39790(+)
634500.EbC_08480(+)
634500.EbC_35200(+)
634500.EbC_10430(+)
634500.EbC_31210(+)
634500.EbC_31740(+)
634500.EbC_10000(+)
634500.EbC_29180(+)
634500.EbC_21530(+)
634500.EbC_36420(+)
634500.EbC_44630(+)
634500.EbC_35900(+)
634500.EbC_27380(+)not used
634500.EbC_22260(+)
634500.EbC_23640(+)not used
634500.EbC_22860(+)
634500.EbC_23800(+)
634500.EbC_43430(+)
634500.EbC_05020(+)
634500.EbC_34250(+)
634500.EbC_20720(+)
634500.EbC_00650(+)
634500.EbC_06430(+)
634500.EbC_41580(+)
634500.EbC_25170(+)
634500.EbC_28090(+)
634500.EbC_39110(+)
634500.EbC_43720(+)
634500.EbC_30880(+)
634500.EbC_33180(+)
634500.EbC_27730(+)
634500.EbC_06160(+)
634500.EbC_17140(+)
634500.EbC_41160(+)
634500.EbC_05840(+)
634500.EbC_02420(+)
634500.EbC_22700+
634500.EbC_05070(+)
634500.EbC_23810(+)
634500.EbC_19870(+)
634500.EbC_14000(+)
634500.EbC_09170(+)
634500.EbC_40990(+)
634500.EbC_24140(+)
634500.EbC_31160(+)
634500.EbC_00730(+)
634500.EbC_01730(+)
634500.EbC_39160(+)
634500.EbC_44610(+)
634500.EbC_16150(+)
634500.EbC_36230(+)
634500.EbC_26120(+)
634500.EbC_19000(+)
634500.EbC_03110(+)
634500.EbC_16440(+)
634500.EbC_32950(+)
634500.EbC_11220(+)
634500.EbC_31170(+)
634500.EbC_13790(+)
634500.EbC_30950(+)
634500.EbC_31950(+)
634500.EbC_01340(+)
634500.EbC_30220(+)
634500.EbC_13260(+)
634500.EbC_26000(+)
634500.EbC_38080(+)
634500.EbC_27990(+)
634500.EbC_12680(+)
634500.EbC_26130(+)
634500.EbC_31090(+)
634500.EbC_29520(+)
634500.EbC_22010(+)
634500.EbC_11490(+)
634500.EbC_24760(+)
634500.EbC_04050(+)
634500.EbC_13410(+)
634500.EbC_05980(+)
634500.EbC_37580(+)
634500.EbC_40390(+)
634500.EbC_27670(+)
634500.EbC_06400(+)
634500.EbC_22220(+)
634500.EbC_35430(+)
634500.EbC_40530(+)
634500.EbC_11060(+)
634500.EbC_18150(+)
634500.EbC_17690(+)
634500.EbC_03830(+)
634500.EbC_03890(+)
634500.EbC_13400(+)
634500.EbC_20270(+)
634500.EbC_17920(+)
634500.EbC_14970(+)
634500.EbC_14510(+)
634500.EbC_02690(+)
634500.EbC_30440(+)
634500.EbC_13330(+)
634500.EbC_42330(+)
634500.EbC_19610(+)
634500.EbC_25640(+)
634500.EbC_36200(+)
634500.EbC_37260(+)
634500.EbC_26580(+)
634500.EbC_41050(+)
634500.EbC_45750(+)
634500.EbC_33600(+)
634500.EbC_42880(+)
634500.EbC_04070(+)
634500.EbC_31630(+)
634500.EbC_24520(+)
634500.EbC_04220(+)
634500.EbC_41530(+)
634500.EbC_31850(+)
634500.EbC_12580(+)
634500.EbC_12120(+)
634500.EbC_05450(+)
634500.EbC_44230(+)
634500.EbC_19730(+)
634500.EbC_07940(+)
634500.EbC_22110(+)
634500.EbC_27250(+)
634500.EbC_04680(+)
634500.EbC_32350(+)not used
634500.EbC_36720(+)
634500.EbC_15250(+)
634500.EbC_05790(+)
634500.EbC_22180(+)
634500.EbC_24220(+)
634500.EbC_20210(+)
634500.EbC_40920(+)
634500.EbC_21850(+)
634500.EbC_06830(+)
634500.EbC_08430(+)
634500.EbC_30860(+)
634500.EbC_26040(+)
634500.EbC_31990(+)
634500.EbC_01540(+)
634500.EbC_37110(+)
634500.EbC_07760(+)
634500.EbC_36400(+)
634500.EbC_07020(+)
634500.EbC_11140(+)
634500.EbC_37040(+)
634500.EbC_43820(+)
634500.EbC_43560(+)
634500.EbC_43130(+)
634500.EbC_40930(+)
634500.EbC_30470(+)
634500.EbC_06220(+)
634500.EbC_38120(+)
634500.EbC_28460(+)
634500.EbC_25460(+)
634500.EbC_19390(+)
634500.EbC_21100(+)
634500.EbC_18370(+)
634500.EbC_02940(+)
634500.EbC_22950(+)
634500.EbC_10010(+)
634500.EbC_13370(+)
634500.EbC_05830(+)
634500.EbC_15430(+)
634500.EbC_31280(+)
634500.EbC_10570(+)
634500.EbC_25680(+)
634500.EbC_33100(+)
634500.EbC_13600(+)
634500.EbC_22090(+)
634500.EbC_17120(+)
634500.EbC_42680(+)
634500.EbC_07670(+)
634500.EbC_11760(+)
634500.EbC_11090(+)
634500.EbC_35390(+)
634500.EbC_05390(+)
634500.EbC_24650(+)
634500.EbC_40910(+)
634500.EbC_21790(+)
634500.EbC_31250(+)
634500.EbC_17450(+)
634500.EbC_06240(+)
634500.EbC_37890(+)
634500.EbC_36220(+)not used
634500.EbC_45360(+)
634500.EbC_22150(+)
634500.EbC_37960(+)not used
634500.EbC_15390(+)
634500.EbC_18710(+)
634500.EbC_23110(+)
634500.EbC_07530(+)
634500.EbC_09270(+)
634500.EbC_13240(+)
634500.EbC_06900(+)
634500.EbC_01660(+)
634500.EbC_40670(+)
634500.EbC_01470(+)
634500.EbC_39710(+)
634500.EbC_40100(+)
634500.EbC_32720(+)
634500.EbC_03350(+)
634500.EbC_38150(+)
634500.EbC_22630(+)
634500.EbC_45130(+)
634500.EbC_16340(+)
634500.EbC_45220(+)
634500.EbC_25300(+)
634500.EbC_23510(+)
634500.EbC_43860(+)
634500.EbC_38820(+)
634500.EbC_14040(+)
634500.EbC_21680(+)
634500.EbC_40400(+)
634500.EbC_06460(+)
634500.EbC_43440(+)
634500.EbC_39470(+)
634500.EbC_12500(+)
634500.EbC_17100(+)
634500.EbC_03730(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 0.3 (3/10 KEGG proteins)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================