Metamenu

Effective results for Geobacillus thermoglucosidasius C56-YS93 (eggnog40)

Summary

Number of putative secreted proteins: 55
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 55 proteins (0 high, 55 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
634956.Geoth_0915(PF01695)(mitochondrial)
634956.Geoth_0940(PF01351)(plastid)
634956.Geoth_1986(PF00665)(mitochondrial)
634956.Geoth_2442(PF00665)
634956.Geoth_3001(PF00665)
634956.Geoth_3000(PF01695)
634956.Geoth_1943(PF11563)
634956.Geoth_1944(PF11563)
634956.Geoth_1945(PF11563)
634956.Geoth_0202(PF00665)
634956.Geoth_0370(PF03161)
634956.Geoth_0521(PF00665)
634956.Geoth_0520(PF01695)
634956.Geoth_0309(PF01695)
634956.Geoth_0308(PF00665)
634956.Geoth_2017(PF00665)
634956.Geoth_2016(PF01695)
634956.Geoth_0314(PF01695)
634956.Geoth_0313(PF00665)
634956.Geoth_1868(PF11563)
634956.Geoth_3745(PF08950)
634956.Geoth_2972(PF02873)
634956.Geoth_2796(PF02873)
634956.Geoth_0513(PF00665)
634956.Geoth_3420(PF00665)
634956.Geoth_1103(PF01351)
634956.Geoth_0678(PF00665)
634956.Geoth_3433(PF01695)
634956.Geoth_3724(PF00665)
634956.Geoth_3725(PF01695)
634956.Geoth_0668(PF00665)
634956.Geoth_0669(PF01695)
634956.Geoth_0495(PF01695)
634956.Geoth_0496(PF00665)
634956.Geoth_3413(PF01695)
634956.Geoth_3414(PF00665)
634956.Geoth_2386(PF03059)
634956.Geoth_0480(PF00665)
634956.Geoth_0481(PF01695)
634956.Geoth_0487(PF00665)
634956.Geoth_3278(PF01695)
634956.Geoth_2717(PF01351)
634956.Geoth_0922(PF08761)
634956.Geoth_2240(PF00665)
634956.Geoth_3595(PF00665)
634956.Geoth_3594(PF01695)
634956.Geoth_3596(PF01695)
634956.Geoth_3593(PF00665)
634956.Geoth_1990(PF00665)
634956.Geoth_0765(PF08761)
634956.Geoth_2463(PF00665)
634956.Geoth_2461(PF00665)
634956.Geoth_1984(PF00665)
634956.Geoth_1981(PF00665)
634956.Geoth_2999(PF00665)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================