Effective results for Actinobacillus minor NM305 (eggnog40)

Summary

Number of putative secreted proteins: 25
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 25 proteins (4 high, 21 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
637911.AM305_05339				(PF12762)	(mitochondrial)
637911.AM305_08479				(PF05704)	mitochondrial
637911.AM305_04573				(PF12762)	(mitochondrial)
637911.AM305_04548				(PF12762)	(mitochondrial); mitochondrial
637911.AM305_10121				(PF12762)	(plastid)
637911.AM305_07959				(PF03143)	not used
637911.AM305_09146				(PF13151)
637911.AM305_00764				(PF03143)	not used
637911.AM305_02713				(PF03143)	not used
637911.AM305_02398				(PF01501)
637911.AM305_05284				(PF01501)
637911.AM305_00855				(PF12949)
637911.AM305_00519				(PF06414)
637911.AM305_08986				(PF04664)
637911.AM305_11730				(PF05495)
637911.AM305_07703				PF10548
637911.AM305_05100				PF03175
637911.AM305_04728				(PF10063)
637911.AM305_03962				PF10548
637911.AM305_03233				(PF10571)
637911.AM305_05584				(PF05704)
637911.AM305_05579				PF09612
637911.AM305_05147				(PF03143)	not used
637911.AM305_11900				(PF06414)
637911.AM305_12055				(PF01501)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================