Effective results for Segniliparus rotundus DSM 44985 (eggnog40)

Summary

Number of putative secreted proteins: 37
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 37 proteins (7 high, 30 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
640132.Srot_1138				(PF12899)	mitochondrial
640132.Srot_2619				(PF00648)	ER
640132.Srot_2845				(PF14021)
640132.Srot_2540				(PF08354)
640132.Srot_2948				(PF06013)
640132.Srot_2949				(PF06013)
640132.Srot_2953				(PF02575)
640132.Srot_1893				(PF13810)
640132.Srot_0784				(PF14021)
640132.Srot_0785				(PF06013)
640132.Srot_0786				(PF06013)
640132.Srot_1099				(PF06013)
640132.Srot_0308				(PF06013)
640132.Srot_0309				(PF06013)
640132.Srot_2494				(PF06013)
640132.Srot_2495				(PF06013)
640132.Srot_2491				PF04505
640132.Srot_2805				(PF06013)
640132.Srot_2806				(PF06013)
640132.Srot_2801				(PF02575)
640132.Srot_0622				(PF02575)
640132.Srot_2616				PF04505
640132.Srot_1853				PF04505
640132.Srot_1854				PF04505
640132.Srot_0277				PF04505
640132.Srot_1701				(PF13810)
640132.Srot_1640				PF08213	not used
640132.Srot_1813				(PF02575)
640132.Srot_0257				(PF02575)
640132.Srot_2394				(PF02575)
640132.Srot_0806				PF02257
640132.Srot_0782				(PF02575)
640132.Srot_2503				(PF02575)
640132.Srot_0650				(PF02575)
640132.Srot_2186				(PF13810)
640132.Srot_1195				(PF02575)
640132.Srot_0746				(PF06013)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================