Metamenu

Effective results for Simonsiella muelleri ATCC 29453 (eggnog40)

Summary

Number of putative secreted proteins: 49
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 5 eukaryotic-like domains, contained in 49 proteins (46 high, 3 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
641147.HMPREF9021_00385(PF13664)ER; (mitochondrial)
641147.HMPREF9021_01181(PF13664)ER
641147.HMPREF9021_02423PF01609(plastid)
641147.HMPREF9021_01296PF01609(plastid)
641147.HMPREF9021_00823PF01609(ER)
641147.HMPREF9021_01109PF01609
641147.HMPREF9021_00882PF01609
641147.HMPREF9021_01213PF01609
641147.HMPREF9021_01590PF06582
641147.HMPREF9021_01202PF01609
641147.HMPREF9021_00404PF01609
641147.HMPREF9021_00403PF01609not used
641147.HMPREF9021_01979PF04383
641147.HMPREF9021_01300PF01609
641147.HMPREF9021_00144PF01609
641147.HMPREF9021_00143PF01609
641147.HMPREF9021_00783PF01609
641147.HMPREF9021_00546PF01609
641147.HMPREF9021_00231PF01609
641147.HMPREF9021_00232PF01609
641147.HMPREF9021_02175PF01609
641147.HMPREF9021_00846PF01609
641147.HMPREF9021_02356PF01609
641147.HMPREF9021_02220PF04383
641147.HMPREF9021_01159(PF11969)
641147.HMPREF9021_02349PF04383
641147.HMPREF9021_02188PF01609
641147.HMPREF9021_02344PF01609not used
641147.HMPREF9021_01299PF01609
641147.HMPREF9021_01295PF01609
641147.HMPREF9021_01279PF01609
641147.HMPREF9021_01278PF01609
641147.HMPREF9021_00472PF01609
641147.HMPREF9021_00471PF01609
641147.HMPREF9021_01877PF01609
641147.HMPREF9021_01876PF01609
641147.HMPREF9021_01866PF01609
641147.HMPREF9021_02385PF01609not used
641147.HMPREF9021_00821PF01609
641147.HMPREF9021_00820PF01609
641147.HMPREF9021_00238PF01609not used
641147.HMPREF9021_00547PF01609
641147.HMPREF9021_02451PF01609
641147.HMPREF9021_01016PF01609not used
641147.HMPREF9021_01649PF04383
641147.HMPREF9021_01824PF01609
641147.HMPREF9021_01825PF01609
641147.HMPREF9021_00774PF04383
641147.HMPREF9021_02324PF01609

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================