Metamenu

Effective results for Neisseria sp. oral taxon 014 str. F0314 (eggnog40)

Summary

Number of putative secreted proteins: 13
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 13 proteins (1 high, 12 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
641149.HMPREF9016_00001(PF12836)ER
641149.HMPREF9016_01884(PF12836)ER
641149.HMPREF9016_02225(PF12836)not used
641149.HMPREF9016_01922(PF05076)
641149.HMPREF9016_01920(PF05076)
641149.HMPREF9016_01925(PF05076)
641149.HMPREF9016_01445(PF11969)
641149.HMPREF9016_01119(PF12836)not used
641149.HMPREF9016_00655(PF00755)
641149.HMPREF9016_00418PF07492
641149.HMPREF9016_01324(PF03162)
641149.HMPREF9016_02312(PF12836)not used
641149.HMPREF9016_01669(PF12836)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================