Metamenu

Effective results for Desulfovibrio desulfuricans ND132 (eggnog40)

Summary

Number of putative secreted proteins: 70
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 26 eukaryotic-like domains, contained in 70 proteins (2 high, 68 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
641491.DND132_0633(PF01558) (PF17147) (PF01855) (PF10371)
641491.DND132_0992(PF01558) (PF17147) (PF01855) (PF10371)
641491.DND132_2866(PF01558) (PF17147) (PF01855) (PF10371)
641491.DND132_1357(PF05935)ER
641491.DND132_1328(PF00939)(ER); ER
641491.DND132_1536PF05735ER
641491.DND132_0127(PF06119)ER
641491.DND132_0124(PF17147) (PF01855)(ER)
641491.DND132_2685(PF13237)(ER)
641491.DND132_0471(PF13524)ER
641491.DND132_0691(PF14691)ER
641491.DND132_0858(PF00939)ER
641491.DND132_2125(PF00939)ER
641491.DND132_1475(PF16983)(ER)
641491.DND132_0984(PF00939)(ER)
641491.DND132_0426(PF01880)ER
641491.DND132_2369(PF02026)(mitochondrial)
641491.DND132_2766(PF12862)ER
641491.DND132_3014(PF13524)(mitochondrial); mitochondrial
641491.DND132_2545(PF00882)ER
641491.DND132_0178(PF14691)ER
641491.DND132_2868(PF14691)ER
641491.DND132_0833(PF13237)(mitochondrial)
641491.DND132_3107(PF01513)(mitochondrial)
641491.DND132_2278(PF17147) (PF01855)
641491.DND132_0063(PF01513)(mitochondrial)
641491.DND132_1251(PF01558)(mitochondrial)
641491.DND132_1249(PF17147) (PF01855)
641491.DND132_2757(PF13524)(ER)
641491.DND132_1389(PF13187)(ER)
641491.DND132_0574(PF01558) (PF01855)
641491.DND132_2875(PF00939)
641491.DND132_2873(PF13237)
641491.DND132_0583(PF10143)
641491.DND132_1356(PF05935)
641491.DND132_0342(PF02943)
641491.DND132_1191(PF13524)
641491.DND132_2885(PF01513)
641491.DND132_0142(PF14691)
641491.DND132_0031(PF10294)
641491.DND132_1028(PF13524)
641491.DND132_2643(PF13187)
641491.DND132_2646(PF13187)
641491.DND132_1011(PF13187)
641491.DND132_2333(PF13187)
641491.DND132_2258PF11913
641491.DND132_0126(PF01558)
641491.DND132_0123(PF13187)
641491.DND132_1757(PF01880)
641491.DND132_3466(PF13524)
641491.DND132_3468(PF00882)
641491.DND132_3085(PF05693)
641491.DND132_1104(PF13237)
641491.DND132_0676(PF10294)
641491.DND132_3329(PF10143)
641491.DND132_1117(PF13237)
641491.DND132_2205(PF08357)
641491.DND132_3295(PF01558)
641491.DND132_3296(PF01855)
641491.DND132_2588(PF14691)
641491.DND132_1158(PF01513)
641491.DND132_1156(PF13237)
641491.DND132_1844(PF13187)
641491.DND132_0828(PF06071)
641491.DND132_2280(PF01558)
641491.DND132_1411(PF14691)
641491.DND132_2997(PF13187)
641491.DND132_0766(PF14691)
641491.DND132_2050(PF09825)
641491.DND132_1576(PF06071)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================