Effective results for Desulfovibrio aespoeensis Aspo-2 (eggnog40)

Summary

Number of putative secreted proteins: 109
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 25 eukaryotic-like domains, contained in 109 proteins (33 high, 76 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
643562.Daes_0523PF12762ER; (ER)
643562.Daes_1866(PF13174)ER
643562.Daes_1466PF12762ER; (ER)
643562.Daes_1463PF12762ER; (ER)
643562.Daes_1805PF12762ER; (ER)
643562.Daes_3040(PF13524)(ER); ER
643562.Daes_2153(PF13174)ER
643562.Daes_1577(PF01880)(ER)
643562.Daes_3206PF12762ER; (ER)
643562.Daes_1554(PF13174)ER
643562.Daes_3059(PF03306)ER
643562.Daes_3174(PF13174)ER
643562.Daes_1539(PF13524)ER
643562.Daes_1328PF12762ER; (ER)
643562.Daes_0129PF12762ER; (ER)
643562.Daes_0111PF12762ER; (ER)
643562.Daes_1606(PF07678)mitochondrial
643562.Daes_3296PF12762ER; (ER)
643562.Daes_1150(PF16715)(mitochondrial)
643562.Daes_1283(PF13524)(mitochondrial)
643562.Daes_1668PF12762ER; (ER)
643562.Daes_1712(PF13174)ER
643562.Daes_1124(PF06500)ER
643562.Daes_1125(PF06500)ER
643562.Daes_1268(PF06968)(mitochondrial)
643562.Daes_1464PF13683(mitochondrial)
643562.Daes_2449PF13683(mitochondrial)
643562.Daes_2058PF13683(mitochondrial)
643562.Daes_3219PF13683(mitochondrial)
643562.Daes_0695PF13683(mitochondrial)
643562.Daes_0782(PF13187)(ER)
643562.Daes_2557PF13683(mitochondrial)
643562.Daes_2541(PF01527)(mitochondrial)
643562.Daes_1940PF13683(mitochondrial)
643562.Daes_1304(PF06071)(mitochondrial)
643562.Daes_1881PF13683(mitochondrial)
643562.Daes_0478PF13683(mitochondrial)
643562.Daes_2530PF13683(mitochondrial)
643562.Daes_2537(PF01527)(mitochondrial)
643562.Daes_0627PF13683(mitochondrial)
643562.Daes_0778(PF01527)
643562.Daes_1465(PF01527)
643562.Daes_2961(PF06071)
643562.Daes_0733(PF13174)
643562.Daes_0352(PF03306)
643562.Daes_2611(PF13524)
643562.Daes_0349(PF13187)
643562.Daes_0299(PF06968)
643562.Daes_0696(PF01527)
643562.Daes_1755(PF02943)
643562.Daes_2451PF12762
643562.Daes_2450(PF01527)
643562.Daes_2057(PF01527)
643562.Daes_1349(PF10294)
643562.Daes_2839(PF13524)
643562.Daes_0743(PF09825)
643562.Daes_0363(PF13524)
643562.Daes_0416(PF01527)
643562.Daes_2336(PF10143)
643562.Daes_2026PF13513
643562.Daes_2930PF12762
643562.Daes_1591(PF02732)
643562.Daes_0770(PF06968)
643562.Daes_3034(PF13187)
643562.Daes_3030(PF13534)
643562.Daes_3031(PF13187)
643562.Daes_2030(PF13187)
643562.Daes_0163PF12762
643562.Daes_0302(PF13187)
643562.Daes_0783(PF13534)
643562.Daes_0781(PF13534)
643562.Daes_3333PF13683
643562.Daes_3332(PF01527)
643562.Daes_3331PF12762
643562.Daes_2558(PF01527)
643562.Daes_2553(PF00162)
643562.Daes_0338(PF00622)
643562.Daes_1558(PF00162)
643562.Daes_2789(PF01527)
643562.Daes_2788PF13683
643562.Daes_1941(PF01527)
643562.Daes_1946(PF13187)
643562.Daes_2161(PF10294)
643562.Daes_0628(PF01527)
643562.Daes_3220(PF01527)
643562.Daes_3223PF12762
643562.Daes_1882(PF01527)
643562.Daes_2379PF13683
643562.Daes_2195(PF13524)
643562.Daes_0868(PF13534)
643562.Daes_0599(PF13187)
643562.Daes_0596(PF06968)
643562.Daes_2561(PF01527)
643562.Daes_2560PF13683
643562.Daes_2565PF12762
643562.Daes_1438(PF10143)
643562.Daes_2981(PF02516)
643562.Daes_0477(PF01527)
643562.Daes_2642(PF13534)
643562.Daes_0807(PF01880)
643562.Daes_1075(PF13534)
643562.Daes_0495(PF01527)
643562.Daes_3288(PF13187)
643562.Daes_2663(PF13187)
643562.Daes_2529(PF01527)
643562.Daes_2090(PF13187)
643562.Daes_2380(PF01527)
643562.Daes_2709(PF05693)
643562.Daes_0014PF11913

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================