Metamenu

Effective results for Corynebacterium ammoniagenes DSM 20306 (eggnog40)

Summary

Number of putative secreted proteins: 11
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 11 proteins (0 high, 11 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
649754.HMPREF0281_01866(PF00344)(mitochondrial)
649754.HMPREF0281_01865(PF00344)(plastid)
649754.HMPREF0281_02466(PF01490)
649754.HMPREF0281_01212(PF08354)
649754.HMPREF0281_00614(PF07976)
649754.HMPREF0281_01056(PF07976)
649754.HMPREF0281_00863(PF05495)
649754.HMPREF0281_00720(PF01195)
649754.HMPREF0281_00630(PF00454)
649754.HMPREF0281_00714(PF01195)
649754.HMPREF0281_00958(PF08354)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================