Metamenu

Effective results for Rhodopseudomonas palustris DX-1 (eggnog40)

Summary

Number of putative secreted proteins: 130
- Predicted by T4SEpre: 115
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 37 proteins (2 high, 35 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
652103.Rpdx1_0096+ER
652103.Rpdx1_2245+ER
652103.Rpdx1_1629+(mitochondrial)
652103.Rpdx1_3750+ER
652103.Rpdx1_3374+(ER); (plastid)
652103.Rpdx1_4992+mitochondrial; (mitochondrial)
652103.Rpdx1_3973(PF03209)mitochondrial
652103.Rpdx1_0278+ER
652103.Rpdx1_4694+ER
652103.Rpdx1_4038+ER
652103.Rpdx1_3988(PF03209)ER
652103.Rpdx1_1027+ER
652103.Rpdx1_4028(PF03209)ER
652103.Rpdx1_3951+ER
652103.Rpdx1_4669+ER
652103.Rpdx1_3154+ER
652103.Rpdx1_0540+ER
652103.Rpdx1_1940(PF01697)(mitochondrial); mitochondrial
652103.Rpdx1_2095+(mitochondrial)
652103.Rpdx1_1788+(mitochondrial)
652103.Rpdx1_1960+ER
652103.Rpdx1_1753+(ER)
652103.Rpdx1_2051+ER
652103.Rpdx1_1698+mitochondrial
652103.Rpdx1_4357+(ER)
652103.Rpdx1_1253+ER
652103.Rpdx1_0533+ER
652103.Rpdx1_3269+ER
652103.Rpdx1_3539+ER
652103.Rpdx1_4840+mitochondrial; (mitochondrial)
652103.Rpdx1_4941+ER
652103.Rpdx1_1529+(ER)
652103.Rpdx1_2460+(mitochondrial)
652103.Rpdx1_2646(PF02931)ER
652103.Rpdx1_1601(PF00839)ER
652103.Rpdx1_0414+ER
652103.Rpdx1_2504+(mitochondrial)
652103.Rpdx1_1462+plastid
652103.Rpdx1_0987(PF14295)(plastid)
652103.Rpdx1_4031(PF08446) (PF00360)
652103.Rpdx1_3982(PF08446) (PF00360)
652103.Rpdx1_3960(PF00016) (PF02788)
652103.Rpdx1_1142(PF08446) (PF00360)
652103.Rpdx1_4794(PF00148)plastid
652103.Rpdx1_1177+(mitochondrial)
652103.Rpdx1_4819(PF00016) (PF02788)
652103.Rpdx1_4664(PF00839)(mitochondrial)
652103.Rpdx1_0372(PF00016) (PF02788)
652103.Rpdx1_1424+(plastid)
652103.Rpdx1_3480+(mitochondrial)
652103.Rpdx1_0116(PF08446) (PF00360)
652103.Rpdx1_2996+(mitochondrial)
652103.Rpdx1_3812+(plastid)
652103.Rpdx1_4388+(ER)
652103.Rpdx1_2575+(mitochondrial)
652103.Rpdx1_0892+
652103.Rpdx1_1858+
652103.Rpdx1_0235+
652103.Rpdx1_0886+
652103.Rpdx1_2762+
652103.Rpdx1_1440+
652103.Rpdx1_3570+
652103.Rpdx1_4558+
652103.Rpdx1_3997(PF00148)
652103.Rpdx1_3996(PF00148)
652103.Rpdx1_1133+
652103.Rpdx1_3977(PF00148)
652103.Rpdx1_3978(PF00148)
652103.Rpdx1_4504(PF05706)
652103.Rpdx1_3174(PF13468)
652103.Rpdx1_0196+
652103.Rpdx1_3314+
652103.Rpdx1_3883+
652103.Rpdx1_0859+
652103.Rpdx1_3761+
652103.Rpdx1_3631+
652103.Rpdx1_3307+
652103.Rpdx1_0034+
652103.Rpdx1_2206+
652103.Rpdx1_2370+
652103.Rpdx1_4795(PF00148)
652103.Rpdx1_4796(PF00148)
652103.Rpdx1_4797(PF00148)
652103.Rpdx1_2975+
652103.Rpdx1_1015+
652103.Rpdx1_1304+
652103.Rpdx1_3849+
652103.Rpdx1_2419(PF00148)
652103.Rpdx1_2418(PF00148)
652103.Rpdx1_3456PF13455
652103.Rpdx1_4677+
652103.Rpdx1_0823(PF02171)
652103.Rpdx1_2624(PF13468)
652103.Rpdx1_2389+
652103.Rpdx1_3661+
652103.Rpdx1_4486+
652103.Rpdx1_4245+
652103.Rpdx1_4667+
652103.Rpdx1_0528+
652103.Rpdx1_3330+
652103.Rpdx1_0581+
652103.Rpdx1_3125(PF00148)
652103.Rpdx1_3123(PF00148)
652103.Rpdx1_2255+
652103.Rpdx1_1564(PF13468)
652103.Rpdx1_4906+
652103.Rpdx1_0104+
652103.Rpdx1_1187+
652103.Rpdx1_0615+
652103.Rpdx1_1227+
652103.Rpdx1_0605+
652103.Rpdx1_2992(PF00940)
652103.Rpdx1_4148+
652103.Rpdx1_1394(PF01442)
652103.Rpdx1_0016+
652103.Rpdx1_3806+
652103.Rpdx1_4447+
652103.Rpdx1_4448+
652103.Rpdx1_0131+
652103.Rpdx1_4559+
652103.Rpdx1_3858+
652103.Rpdx1_2654+
652103.Rpdx1_1283+
652103.Rpdx1_2487PF13455
652103.Rpdx1_2649+
652103.Rpdx1_3352(PF00016)
652103.Rpdx1_4081+
652103.Rpdx1_0648+
652103.Rpdx1_4172+
652103.Rpdx1_1608+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 2.4 (24/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================