Effective results for Eubacterium siraeum 70/3 (eggnog40)

Summary

Number of putative secreted proteins: 39
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 39 proteins (2 high, 37 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
657319.EUS_07490				(PF02156)	ER
657319.EUS_07800				(PF00150)	ER
657319.EUS_07530				(PF06541)	ER
657319.EUS_21570				(PF02156)	ER
657319.EUS_00270				(PF00150)	ER
657319.EUS_11000				(PF00150)	ER
657319.EUS_17890				(PF00150)	ER
657319.EUS_04000				(PF06541)	ER
657319.EUS_18990				(PF06541)	ER
657319.EUS_28120				(PF00150)	ER
657319.EUS_08060				(PF00150)	(mitochondrial); (ER)
657319.EUS_16610				(PF00150)	ER
657319.EUS_23360				(PF03415)	mitochondrial
657319.EUS_23350				(PF03415)	(ER)
657319.EUS_07010				(PF00150)
657319.EUS_07020				(PF00150)
657319.EUS_04280				(PF00150)
657319.EUS_23620				(PF13155)
657319.EUS_24030				(PF02938)
657319.EUS_25340				(PF02229)
657319.EUS_18650				PF12873
657319.EUS_18130				(PF00150)
657319.EUS_02580				(PF14311)
657319.EUS_14880				(PF02156)
657319.EUS_15850				(PF13155)
657319.EUS_16400				(PF13155)
657319.EUS_25940				(PF09359)
657319.EUS_17100				(PF16804)
657319.EUS_13590				(PF02057)
657319.EUS_18960				(PF09359)
657319.EUS_02970				(PF02229)
657319.EUS_02090				(PF02156)
657319.EUS_10620				(PF13151)
657319.EUS_13050				(PF13155)
657319.EUS_02790				(PF13155)
657319.EUS_12390				(PF02156)
657319.EUS_12370				(PF02938)
657319.EUS_15710				(PF01991)
657319.EUS_18630				PF12873

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================