Effective results for Corynebacterium resistens DSM 45100 (eggnog40)

Summary

Number of putative secreted proteins: 48
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 48 proteins (0 high, 48 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
662755.CRES_1097				(PF00438) (PF02773) (PF02772)
662755.CRES_0890				(PF00438) (PF02773) (PF02772)
662755.CRES_1691				(PF13936)	mitochondrial; (mitochondrial)
662755.CRES_1355				(PF13936)	(mitochondrial)
662755.CRES_1348				(PF13518)	mitochondrial
662755.CRES_1013				(PF13518)	mitochondrial
662755.CRES_0141				(PF13518)	mitochondrial
662755.CRES_1632				(PF01195)	mitochondrial
662755.CRES_1552				(PF00438) (PF02773) (PF02772)
662755.CRES_2084				(PF13936)	mitochondrial
662755.CRES_1626				(PF00872)	plastid
662755.CRES_1891				(PF00872)	plastid
662755.CRES_1480				(PF13518)	(plastid)
662755.CRES_2096				(PF00872)	plastid
662755.CRES_0102				(PF00872)
662755.CRES_0451				(PF00872)
662755.CRES_0100				(PF00872)
662755.CRES_0692				(PF00872)
662755.CRES_0314				(PF13518)
662755.CRES_2035				(PF00872)
662755.CRES_0072				(PF00872)
662755.CRES_0071				(PF00872)
662755.CRES_0077				(PF13936)
662755.CRES_0784				(PF00872)
662755.CRES_0092				(PF13518)
662755.CRES_0325				(PF00872)
662755.CRES_0067				(PF00872)
662755.CRES_0248				(PF13518)
662755.CRES_1692				(PF00872)
662755.CRES_2005				(PF00872)
662755.CRES_1915				(PF00872)
662755.CRES_1353				(PF00872)
662755.CRES_0635				(PF00872)
662755.CRES_1162				(PF00872)
662755.CRES_0622				(PF00872)
662755.CRES_0576				(PF13936)
662755.CRES_1800				(PF13455)
662755.CRES_0614				(PF13936)
662755.CRES_1635				(PF01195)
662755.CRES_0601				(PF13936)
662755.CRES_0600				(PF00872)
662755.CRES_1998				(PF00872)
662755.CRES_2147				(PF00872)
662755.CRES_0705				(PF00872)
662755.CRES_0019				(PF00872)
662755.CRES_0017				(PF00872)
662755.CRES_1191				(PF17048)
662755.CRES_1266				(PF13936)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================