Metamenu

Effective results for Ethanoligenens harbinense YUAN-3 (eggnog40)

Summary

Number of putative secreted proteins: 79
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 79 proteins (8 high, 71 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
663278.Ethha_0547(PF09992) PF16656ER
663278.Ethha_0552(PF09992) PF16656(mitochondrial)
663278.Ethha_1695(PF09992) PF16656ER
663278.Ethha_1258PF11443(mitochondrial)
663278.Ethha_1955PF15796(ER)
663278.Ethha_1601(PF01183)ER
663278.Ethha_0120PF16656ER
663278.Ethha_0481(PF01183)ER
663278.Ethha_1198(PF01183)ER
663278.Ethha_0725(PF09992)ER
663278.Ethha_0108(PF01183)ER
663278.Ethha_0731PF16656ER
663278.Ethha_0442(PF01183)(ER)
663278.Ethha_2404(PF00543)mitochondrial
663278.Ethha_1659(PF00882)mitochondrial; (mitochondrial)
663278.Ethha_0301PF16656ER
663278.Ethha_2750(PF01183)ER
663278.Ethha_0041(PF00112)ER
663278.Ethha_1336(PF13246)mitochondrial; (mitochondrial)
663278.Ethha_1566(PF00543)(mitochondrial)
663278.Ethha_0010(PF01183)(mitochondrial)
663278.Ethha_2314(PF00148)
663278.Ethha_2316(PF00148)
663278.Ethha_2317(PF00148)
663278.Ethha_2310(PF00543)
663278.Ethha_2311(PF00543)
663278.Ethha_2312(PF00148)
663278.Ethha_0516(PF01695)
663278.Ethha_1354(PF01695)
663278.Ethha_1238(PF01695)
663278.Ethha_2293(PF02906)
663278.Ethha_1762(PF05063)
663278.Ethha_1373(PF14249)
663278.Ethha_1372(PF01183)
663278.Ethha_2614(PF02906)
663278.Ethha_0618(PF03050)
663278.Ethha_1562(PF00148)
663278.Ethha_1563(PF00148)
663278.Ethha_1561(PF00148)
663278.Ethha_1564(PF00148)
663278.Ethha_1565(PF00543)
663278.Ethha_1369(PF13246)
663278.Ethha_1810(PF16158)
663278.Ethha_1700(PF01695)
663278.Ethha_2736(PF09992)
663278.Ethha_0971(PF03050)
663278.Ethha_1603(PF00112)
663278.Ethha_2146(PF00543)
663278.Ethha_2418(PF03050)
663278.Ethha_0946(PF01695)
663278.Ethha_0708(PF09992)
663278.Ethha_1945(PF03050)
663278.Ethha_1720(PF00148)
663278.Ethha_1721(PF00148)
663278.Ethha_0964(PF01695)
663278.Ethha_2395(PF00112)
663278.Ethha_2184(PF01695)
663278.Ethha_2199(PF00543)
663278.Ethha_0031(PF02906)
663278.Ethha_0583(PF00543)
663278.Ethha_0454(PF10571)
663278.Ethha_1853(PF01183)
663278.Ethha_1677(PF05063)
663278.Ethha_1670(PF03050)
663278.Ethha_0631(PF03050)
663278.Ethha_2695(PF02906)
663278.Ethha_2403(PF00543)
663278.Ethha_0052(PF02906)
663278.Ethha_0479(PF00112)
663278.Ethha_0874(PF01695)
663278.Ethha_1870(PF01695)
663278.Ethha_1094(PF00882)
663278.Ethha_0074(PF01695)
663278.Ethha_0522(PF01695)
663278.Ethha_1235(PF03050)
663278.Ethha_2338(PF03050)
663278.Ethha_0889(PF03050)
663278.Ethha_0880(PF03050)
663278.Ethha_2019(PF01991)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================